miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5429 3' -61 NC_001798.1 + 4110 0.69 0.536167
Target:  5'- cUCGGCCCUggGCGGGcUCGg--CCGGGg -3'
miRNA:   3'- uAGCUGGGG--CGCCUcAGCagaGGCCC- -5'
5429 3' -61 NC_001798.1 + 4457 0.79 0.141506
Target:  5'- -aCG-CCCCGCGGAccgcggacGUCGUCUCCGGu -3'
miRNA:   3'- uaGCuGGGGCGCCU--------CAGCAGAGGCCc -5'
5429 3' -61 NC_001798.1 + 4971 0.7 0.502586
Target:  5'- cUCGGCCCCGCGGcccugcgcgucgucGUCGUCUUCu-- -3'
miRNA:   3'- uAGCUGGGGCGCCu-------------CAGCAGAGGccc -5'
5429 3' -61 NC_001798.1 + 7641 0.67 0.671523
Target:  5'- -cCGGCCCC-CGGAGUCccccggCUCCGa- -3'
miRNA:   3'- uaGCUGGGGcGCCUCAGca----GAGGCcc -5'
5429 3' -61 NC_001798.1 + 11696 0.66 0.727927
Target:  5'- uGUCGuugUCCGUGGAgggguggGUCGggaggCUCCGGGg -3'
miRNA:   3'- -UAGCug-GGGCGCCU-------CAGCa----GAGGCCC- -5'
5429 3' -61 NC_001798.1 + 15227 0.66 0.747457
Target:  5'- -gCGGgUCCGUGuGGGUgCGUCUuuGGGu -3'
miRNA:   3'- uaGCUgGGGCGC-CUCA-GCAGAggCCC- -5'
5429 3' -61 NC_001798.1 + 15861 0.69 0.564733
Target:  5'- gGUCGACCCCcuCGGGGUCuGUCcgCaGGGc -3'
miRNA:   3'- -UAGCUGGGGc-GCCUCAG-CAGa-GgCCC- -5'
5429 3' -61 NC_001798.1 + 22988 0.66 0.747457
Target:  5'- cGUCGACgagccugCCGCGGAcggcGUCGUCUcgCCGcGGc -3'
miRNA:   3'- -UAGCUGg------GGCGCCU----CAGCAGA--GGC-CC- -5'
5429 3' -61 NC_001798.1 + 27563 0.79 0.156029
Target:  5'- -gCGGCgCCCGCGGGGgagCGgccggCUCCGGGg -3'
miRNA:   3'- uaGCUG-GGGCGCCUCa--GCa----GAGGCCC- -5'
5429 3' -61 NC_001798.1 + 46764 0.66 0.75662
Target:  5'- -aCGGCCCauuCGGAGUCcccgcauUCUgCCGGGg -3'
miRNA:   3'- uaGCUGGGgc-GCCUCAGc------AGA-GGCCC- -5'
5429 3' -61 NC_001798.1 + 51285 0.67 0.652094
Target:  5'- --gGGCCCCGCGGGGagG-CUacCUGGGc -3'
miRNA:   3'- uagCUGGGGCGCCUCagCaGA--GGCCC- -5'
5429 3' -61 NC_001798.1 + 59675 0.69 0.568574
Target:  5'- cUCGGCUCgCGUGGGGgcggcgggcacgccCGUCUUCGGGc -3'
miRNA:   3'- uAGCUGGG-GCGCCUCa-------------GCAGAGGCCC- -5'
5429 3' -61 NC_001798.1 + 59744 0.67 0.690835
Target:  5'- uUCGGCCCCGgGGugccuccgcuuGGUuccCGgcggUUCCGGGa -3'
miRNA:   3'- uAGCUGGGGCgCC-----------UCA---GCa---GAGGCCC- -5'
5429 3' -61 NC_001798.1 + 64117 0.66 0.738203
Target:  5'- -cCGGCCCCcgacGCguggguaucuagGGGGUCGgugCUCgCGGGg -3'
miRNA:   3'- uaGCUGGGG----CG------------CCUCAGCa--GAG-GCCC- -5'
5429 3' -61 NC_001798.1 + 69401 0.7 0.47174
Target:  5'- -aCGACUCCGCGGGGUCGaUCcCCa-- -3'
miRNA:   3'- uaGCUGGGGCGCCUCAGC-AGaGGccc -5'
5429 3' -61 NC_001798.1 + 70320 0.69 0.555161
Target:  5'- gGUCGGCCCgGCGGAGgcgcgggCGUgcuggcacccgCUCCuGGa -3'
miRNA:   3'- -UAGCUGGGgCGCCUCa------GCA-----------GAGGcCC- -5'
5429 3' -61 NC_001798.1 + 73119 0.67 0.671523
Target:  5'- --gGACUCCGUGGAccUGUCUCCccaGGGg -3'
miRNA:   3'- uagCUGGGGCGCCUcaGCAGAGG---CCC- -5'
5429 3' -61 NC_001798.1 + 75930 0.66 0.741915
Target:  5'- cUCG--CCCGCGGGGUCGaCUcggucucgcagcgcgCCGGGc -3'
miRNA:   3'- uAGCugGGGCGCCUCAGCaGA---------------GGCCC- -5'
5429 3' -61 NC_001798.1 + 76582 0.68 0.593682
Target:  5'- -cCGGCCCCGCGccGUaCGUCgaCGGGg -3'
miRNA:   3'- uaGCUGGGGCGCcuCA-GCAGagGCCC- -5'
5429 3' -61 NC_001798.1 + 78332 0.7 0.508121
Target:  5'- --aGGCCaCCGCGGAGcUgGUCcggaCCGGGg -3'
miRNA:   3'- uagCUGG-GGCGCCUC-AgCAGa---GGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.