miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5429 3' -61 NC_001798.1 + 120851 0.67 0.657931
Target:  5'- -gCGGCCCCGCGGAGguuguacaaaaagcUCGUgCUggccuucCCGGu -3'
miRNA:   3'- uaGCUGGGGCGCCUC--------------AGCA-GA-------GGCCc -5'
5429 3' -61 NC_001798.1 + 51285 0.67 0.652094
Target:  5'- --gGGCCCCGCGGGGagG-CUacCUGGGc -3'
miRNA:   3'- uagCUGGGGCGCCUCagCaGA--GGCCC- -5'
5429 3' -61 NC_001798.1 + 134154 0.68 0.642354
Target:  5'- cUCGGCCCC-CGGGGcCGUCgcggCCGc- -3'
miRNA:   3'- uAGCUGGGGcGCCUCaGCAGa---GGCcc -5'
5429 3' -61 NC_001798.1 + 85257 0.68 0.62286
Target:  5'- -gCGGCCgCGCGGGGcCGcgcgcgaggCUUCGGGg -3'
miRNA:   3'- uaGCUGGgGCGCCUCaGCa--------GAGGCCC- -5'
5429 3' -61 NC_001798.1 + 87746 0.68 0.602419
Target:  5'- -cCGaACCCCGCGGcccugagccgcgcGGccaCGUCgUCCGGGg -3'
miRNA:   3'- uaGC-UGGGGCGCC-------------UCa--GCAG-AGGCCC- -5'
5429 3' -61 NC_001798.1 + 123417 0.68 0.593682
Target:  5'- -gCGGCCCCGCcGGGUCa---CCGGGg -3'
miRNA:   3'- uaGCUGGGGCGcCUCAGcagaGGCCC- -5'
5429 3' -61 NC_001798.1 + 76582 0.68 0.593682
Target:  5'- -cCGGCCCCGCGccGUaCGUCgaCGGGg -3'
miRNA:   3'- uaGCUGGGGCGCcuCA-GCAGagGCCC- -5'
5429 3' -61 NC_001798.1 + 79290 0.69 0.583999
Target:  5'- -cUGGCCCCGUGGgcGGUgGaggagUUCCGGGg -3'
miRNA:   3'- uaGCUGGGGCGCC--UCAgCa----GAGGCCC- -5'
5429 3' -61 NC_001798.1 + 128826 0.69 0.574347
Target:  5'- uUCGACCCCGCGGAccccggCGcCcCCGcGGc -3'
miRNA:   3'- uAGCUGGGGCGCCUca----GCaGaGGC-CC- -5'
5429 3' -61 NC_001798.1 + 59675 0.69 0.568574
Target:  5'- cUCGGCUCgCGUGGGGgcggcgggcacgccCGUCUUCGGGc -3'
miRNA:   3'- uAGCUGGG-GCGCCUCa-------------GCAGAGGCCC- -5'
5429 3' -61 NC_001798.1 + 15861 0.69 0.564733
Target:  5'- gGUCGACCCCcuCGGGGUCuGUCcgCaGGGc -3'
miRNA:   3'- -UAGCUGGGGc-GCCUCAG-CAGa-GgCCC- -5'
5429 3' -61 NC_001798.1 + 135132 0.69 0.564733
Target:  5'- cUCGACCCCcCGGcGGcCGUCgggCCGGu -3'
miRNA:   3'- uAGCUGGGGcGCC-UCaGCAGa--GGCCc -5'
5429 3' -61 NC_001798.1 + 70320 0.69 0.555161
Target:  5'- gGUCGGCCCgGCGGAGgcgcgggCGUgcuggcacccgCUCCuGGa -3'
miRNA:   3'- -UAGCUGGGgCGCCUCa------GCA-----------GAGGcCC- -5'
5429 3' -61 NC_001798.1 + 124565 0.69 0.545637
Target:  5'- gGUCGAUCUCGgGGAGggCGgcaCCGGGg -3'
miRNA:   3'- -UAGCUGGGGCgCCUCa-GCagaGGCCC- -5'
5429 3' -61 NC_001798.1 + 4110 0.69 0.536167
Target:  5'- cUCGGCCCUggGCGGGcUCGg--CCGGGg -3'
miRNA:   3'- uAGCUGGGG--CGCCUcAGCagaGGCCC- -5'
5429 3' -61 NC_001798.1 + 78332 0.7 0.508121
Target:  5'- --aGGCCaCCGCGGAGcUgGUCcggaCCGGGg -3'
miRNA:   3'- uagCUGG-GGCGCCUC-AgCAGa---GGCCC- -5'
5429 3' -61 NC_001798.1 + 105994 0.7 0.507197
Target:  5'- -aCGACCCCuggggagGgGGGGUCGcUCUCUGGu -3'
miRNA:   3'- uaGCUGGGG-------CgCCUCAGC-AGAGGCCc -5'
5429 3' -61 NC_001798.1 + 4971 0.7 0.502586
Target:  5'- cUCGGCCCCGCGGcccugcgcgucgucGUCGUCUUCu-- -3'
miRNA:   3'- uAGCUGGGGCGCCu-------------CAGCAGAGGccc -5'
5429 3' -61 NC_001798.1 + 153148 0.7 0.49891
Target:  5'- -gCGGCCUCGCGcAGaccuUCGgagCUCCGGGg -3'
miRNA:   3'- uaGCUGGGGCGCcUC----AGCa--GAGGCCC- -5'
5429 3' -61 NC_001798.1 + 69401 0.7 0.47174
Target:  5'- -aCGACUCCGCGGGGUCGaUCcCCa-- -3'
miRNA:   3'- uaGCUGGGGCGCCUCAGC-AGaGGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.