miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5429 5' -58 NC_001798.1 + 25625 0.67 0.80258
Target:  5'- -cCCCgGAGugGuccGCCGAGCGcGGCgGg -3'
miRNA:   3'- auGGG-CUCugCua-UGGCUCGU-CCGgC- -5'
5429 5' -58 NC_001798.1 + 89415 0.67 0.80258
Target:  5'- -cCCCGAGGCacgGCCGGGCgcuuGGGCg- -3'
miRNA:   3'- auGGGCUCUGcuaUGGCUCG----UCCGgc -5'
5429 5' -58 NC_001798.1 + 68748 0.67 0.799938
Target:  5'- aGgCCGGGAUGGUaacgGCCGAacggggccugcccgGguGGCCGg -3'
miRNA:   3'- aUgGGCUCUGCUA----UGGCU--------------CguCCGGC- -5'
5429 5' -58 NC_001798.1 + 51436 0.67 0.797283
Target:  5'- -cCCCGGGGCGcgGCCuuccgcgacggucgaGAuucucGCGGGCCGc -3'
miRNA:   3'- auGGGCUCUGCuaUGG---------------CU-----CGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 4582 0.67 0.793722
Target:  5'- -gUCCGcGGCGGagaaGgCGAGCGGGCCGc -3'
miRNA:   3'- auGGGCuCUGCUa---UgGCUCGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 26502 0.67 0.793722
Target:  5'- cGCgCgGGGACGGUGCUGgccgcGGCGGGCgGc -3'
miRNA:   3'- aUG-GgCUCUGCUAUGGC-----UCGUCCGgC- -5'
5429 5' -58 NC_001798.1 + 22263 0.67 0.793722
Target:  5'- cGCCCGcgccGGGCgcuaaugaGAUGCCGcGCGGGCgGa -3'
miRNA:   3'- aUGGGC----UCUG--------CUAUGGCuCGUCCGgC- -5'
5429 5' -58 NC_001798.1 + 31764 0.67 0.793722
Target:  5'- gGCCgGgcAGGCGcgACCGAcgcgcGCGGGUCGg -3'
miRNA:   3'- aUGGgC--UCUGCuaUGGCU-----CGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 47966 0.67 0.793722
Target:  5'- cGCCCGcggcAGGCGAc-CCGccCAGGCCGa -3'
miRNA:   3'- aUGGGC----UCUGCUauGGCucGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 76736 0.67 0.792829
Target:  5'- cGCCCugGAGGCGAUGCUcaacgacgcgcggGAGCGcGCCa -3'
miRNA:   3'- aUGGG--CUCUGCUAUGG-------------CUCGUcCGGc -5'
5429 5' -58 NC_001798.1 + 92090 0.67 0.792829
Target:  5'- gACCCcaucggaGAGACGAcGgCGGGCAGcaGCCGu -3'
miRNA:   3'- aUGGG-------CUCUGCUaUgGCUCGUC--CGGC- -5'
5429 5' -58 NC_001798.1 + 67299 0.67 0.788339
Target:  5'- gGCCCGAGGuuccGCCGAGCGccacgacggcgguucGGCCa -3'
miRNA:   3'- aUGGGCUCUgcuaUGGCUCGU---------------CCGGc -5'
5429 5' -58 NC_001798.1 + 21823 0.67 0.784722
Target:  5'- aGCCCGcgGGAUGAcgcgggccCCGGGCAGGgCGc -3'
miRNA:   3'- aUGGGC--UCUGCUau------GGCUCGUCCgGC- -5'
5429 5' -58 NC_001798.1 + 141112 0.67 0.784722
Target:  5'- cUACgCCGGGACGccGCCGGcGCaucggcaaccaGGGCCGc -3'
miRNA:   3'- -AUG-GGCUCUGCuaUGGCU-CG-----------UCCGGC- -5'
5429 5' -58 NC_001798.1 + 122547 0.67 0.784722
Target:  5'- aGCCCuuuGAcauCGcgGCCGAGguGGCCu -3'
miRNA:   3'- aUGGGcu-CU---GCuaUGGCUCguCCGGc -5'
5429 5' -58 NC_001798.1 + 6345 0.67 0.784722
Target:  5'- gGgCCGGGGgGAcggGCCGGGgggaCGGGCCGg -3'
miRNA:   3'- aUgGGCUCUgCUa--UGGCUC----GUCCGGC- -5'
5429 5' -58 NC_001798.1 + 6306 0.67 0.784722
Target:  5'- gGgCCGGGGgGAcggGCCGGGgggaCGGGCCGg -3'
miRNA:   3'- aUgGGCUCUgCUa--UGGCUC----GUCCGGC- -5'
5429 5' -58 NC_001798.1 + 6267 0.67 0.784722
Target:  5'- gGgCCGGGGgGAcggGCCGGGgggaCGGGCCGg -3'
miRNA:   3'- aUgGGCUCUgCUa--UGGCUC----GUCCGGC- -5'
5429 5' -58 NC_001798.1 + 24713 0.67 0.784722
Target:  5'- cGCCCGGGGCccg--CGGGCGcGGCCGc -3'
miRNA:   3'- aUGGGCUCUGcuaugGCUCGU-CCGGC- -5'
5429 5' -58 NC_001798.1 + 91959 0.67 0.781996
Target:  5'- -cCCCGGGcccccccguccggcGCGAU-CCGguGGCGGGCCa -3'
miRNA:   3'- auGGGCUC--------------UGCUAuGGC--UCGUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.