miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5430 5' -51 NC_001798.1 + 94137 0.66 0.994751
Target:  5'- -cGACGG-UCUg-GCCGagGCCAAccACGCc -3'
miRNA:   3'- gaCUGCCuAGAgaCGGU--UGGUU--UGCG- -5'
5430 5' -51 NC_001798.1 + 70403 0.66 0.994751
Target:  5'- -aGACGGcgCUCUugGCCGAgaaccuccCCGGGCuGCu -3'
miRNA:   3'- gaCUGCCuaGAGA--CGGUU--------GGUUUG-CG- -5'
5430 5' -51 NC_001798.1 + 30332 0.66 0.994751
Target:  5'- -gGugGGaAUCUCUGacgaCGACCuucacCGCg -3'
miRNA:   3'- gaCugCC-UAGAGACg---GUUGGuuu--GCG- -5'
5430 5' -51 NC_001798.1 + 2981 0.66 0.994751
Target:  5'- -cGGCGGggCg--GCCGGCCcgcgggccccGGGCGCg -3'
miRNA:   3'- gaCUGCCuaGagaCGGUUGG----------UUUGCG- -5'
5430 5' -51 NC_001798.1 + 2490 0.66 0.99391
Target:  5'- -cGGCGGGUCagcGCC-GCgGGGCGCg -3'
miRNA:   3'- gaCUGCCUAGagaCGGuUGgUUUGCG- -5'
5430 5' -51 NC_001798.1 + 89553 0.66 0.99391
Target:  5'- aUGguGCGGGUgauguugaUGCCcGCCAGGCGCg -3'
miRNA:   3'- gAC--UGCCUAgag-----ACGGuUGGUUUGCG- -5'
5430 5' -51 NC_001798.1 + 106634 0.66 0.993821
Target:  5'- --aGCGGGuauggcuUCUCacGCCGGCCAAcagcACGCg -3'
miRNA:   3'- gacUGCCU-------AGAGa-CGGUUGGUU----UGCG- -5'
5430 5' -51 NC_001798.1 + 153174 0.66 0.992965
Target:  5'- ---cCGGggCUCcGCCGGCCGAGgcCGCc -3'
miRNA:   3'- gacuGCCuaGAGaCGGUUGGUUU--GCG- -5'
5430 5' -51 NC_001798.1 + 32558 0.66 0.991907
Target:  5'- gUGGCGGAcCUgCUGCgGGCCGcggccccCGCg -3'
miRNA:   3'- gACUGCCUaGA-GACGgUUGGUuu-----GCG- -5'
5430 5' -51 NC_001798.1 + 24417 0.66 0.991907
Target:  5'- -cGGCGGcGUCgccgGCCGA-CGAGCGCg -3'
miRNA:   3'- gaCUGCC-UAGaga-CGGUUgGUUUGCG- -5'
5430 5' -51 NC_001798.1 + 53366 0.66 0.990725
Target:  5'- -aGACGGG-CUC-GCCAGCgAccCGCa -3'
miRNA:   3'- gaCUGCCUaGAGaCGGUUGgUuuGCG- -5'
5430 5' -51 NC_001798.1 + 97685 0.66 0.990725
Target:  5'- cCUGACcaagcGGUCgCUgGCCAGCCucgGGCGCu -3'
miRNA:   3'- -GACUGc----CUAGaGA-CGGUUGGu--UUGCG- -5'
5430 5' -51 NC_001798.1 + 134589 0.66 0.990725
Target:  5'- cCUGGCG--UUUCcGCCGACCAGgaaggaggGCGCc -3'
miRNA:   3'- -GACUGCcuAGAGaCGGUUGGUU--------UGCG- -5'
5430 5' -51 NC_001798.1 + 39194 0.67 0.989413
Target:  5'- -cGACGGGUCUCgGCgucaAACCccccCGCu -3'
miRNA:   3'- gaCUGCCUAGAGaCGg---UUGGuuu-GCG- -5'
5430 5' -51 NC_001798.1 + 71550 0.67 0.987959
Target:  5'- -cGGCGGAUCcagggcGCCAGCgAGcacACGCa -3'
miRNA:   3'- gaCUGCCUAGaga---CGGUUGgUU---UGCG- -5'
5430 5' -51 NC_001798.1 + 100794 0.67 0.984594
Target:  5'- -gGGCGGGUgUCgGCCGucUCGGGCGUg -3'
miRNA:   3'- gaCUGCCUAgAGaCGGUu-GGUUUGCG- -5'
5430 5' -51 NC_001798.1 + 107467 0.67 0.982664
Target:  5'- -gGACGGcgcgggGUCUCUGCCccgcAUCGAggacACGCu -3'
miRNA:   3'- gaCUGCC------UAGAGACGGu---UGGUU----UGCG- -5'
5430 5' -51 NC_001798.1 + 78694 0.67 0.982664
Target:  5'- gUGGCGGAgaUC-GCCGACCAGGuCGa -3'
miRNA:   3'- gACUGCCUagAGaCGGUUGGUUU-GCg -5'
5430 5' -51 NC_001798.1 + 20961 0.67 0.982664
Target:  5'- -gGGCGGGUCcggggggaugUCUGCCA--UAGugGCa -3'
miRNA:   3'- gaCUGCCUAG----------AGACGGUugGUUugCG- -5'
5430 5' -51 NC_001798.1 + 71596 0.67 0.982462
Target:  5'- -aGGCGG-UCggcCUGUCGggcggcguccucaGCCAGACGCu -3'
miRNA:   3'- gaCUGCCuAGa--GACGGU-------------UGGUUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.