miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5431 3' -61.1 NC_001798.1 + 150179 0.66 0.737421
Target:  5'- cCGCCGCCcccucCGcgGCGUgggggGCGGCaCCGg -3'
miRNA:   3'- -GCGGCGGau---GCuaCGCG-----CGCUGcGGC- -5'
5431 3' -61.1 NC_001798.1 + 43117 0.66 0.737421
Target:  5'- gGUCGCUUccgGCGG-GCGCGCGucccGCGUCa -3'
miRNA:   3'- gCGGCGGA---UGCUaCGCGCGC----UGCGGc -5'
5431 3' -61.1 NC_001798.1 + 61190 0.66 0.737421
Target:  5'- gGUCgGCCUGCaccgGCGCGCGcCGgCGg -3'
miRNA:   3'- gCGG-CGGAUGcua-CGCGCGCuGCgGC- -5'
5431 3' -61.1 NC_001798.1 + 94569 0.66 0.737421
Target:  5'- gGCCGCCaag---GCGCGgGuCGCCa -3'
miRNA:   3'- gCGGCGGaugcuaCGCGCgCuGCGGc -5'
5431 3' -61.1 NC_001798.1 + 122044 0.66 0.737421
Target:  5'- gGCCGUCaGCGGgggagcccuggGCGCGUcgGACGCgGa -3'
miRNA:   3'- gCGGCGGaUGCUa----------CGCGCG--CUGCGgC- -5'
5431 3' -61.1 NC_001798.1 + 141578 0.66 0.737421
Target:  5'- aGCUGCg-GCGGcgGCaCGCGACgGCCGg -3'
miRNA:   3'- gCGGCGgaUGCUa-CGcGCGCUG-CGGC- -5'
5431 3' -61.1 NC_001798.1 + 22985 0.66 0.737421
Target:  5'- gGCCGUCgACGAgccUGcCGCGgaCGGCGUCGu -3'
miRNA:   3'- gCGGCGGaUGCU---AC-GCGC--GCUGCGGC- -5'
5431 3' -61.1 NC_001798.1 + 72841 0.66 0.737421
Target:  5'- gGCCGCacGCGcgGCacgggccccgaGCGgGugGCCGa -3'
miRNA:   3'- gCGGCGgaUGCuaCG-----------CGCgCugCGGC- -5'
5431 3' -61.1 NC_001798.1 + 97454 0.66 0.737421
Target:  5'- gCGCCGCgUGCug-GCGCGgcugGGgGCCGg -3'
miRNA:   3'- -GCGGCGgAUGcuaCGCGCg---CUgCGGC- -5'
5431 3' -61.1 NC_001798.1 + 100181 0.66 0.737421
Target:  5'- cCGUCgGCCgGCGGgugaGCGCGCGcAUGCuCGg -3'
miRNA:   3'- -GCGG-CGGaUGCUa---CGCGCGC-UGCG-GC- -5'
5431 3' -61.1 NC_001798.1 + 120493 0.66 0.737421
Target:  5'- uGCCGgUgcCGGagGCGCGCGuguuggccgugaACGCCGg -3'
miRNA:   3'- gCGGCgGauGCUa-CGCGCGC------------UGCGGC- -5'
5431 3' -61.1 NC_001798.1 + 131017 0.66 0.733677
Target:  5'- cCGCCGCCagGCGAcgggccgcauccaGCGCGCGcucguaGCGCg- -3'
miRNA:   3'- -GCGGCGGa-UGCUa------------CGCGCGC------UGCGgc -5'
5431 3' -61.1 NC_001798.1 + 97520 0.66 0.731801
Target:  5'- gGCCGCCgcggaggaggggggGCGGaggcgugGCGCGgGgACGCCc -3'
miRNA:   3'- gCGGCGGa-------------UGCUa------CGCGCgC-UGCGGc -5'
5431 3' -61.1 NC_001798.1 + 49628 0.66 0.728038
Target:  5'- aGCCGCgagaucCUAUGG-GC-CGCGuACGCCGa -3'
miRNA:   3'- gCGGCG------GAUGCUaCGcGCGC-UGCGGC- -5'
5431 3' -61.1 NC_001798.1 + 77181 0.66 0.728038
Target:  5'- gCGCCGCCgucGCGAcgGCaaguccCGCGGCGaCGg -3'
miRNA:   3'- -GCGGCGGa--UGCUa-CGc-----GCGCUGCgGC- -5'
5431 3' -61.1 NC_001798.1 + 102190 0.66 0.728038
Target:  5'- gGCCcggaaGCCUG----GCGCGCGgcGCGCCGg -3'
miRNA:   3'- gCGG-----CGGAUgcuaCGCGCGC--UGCGGC- -5'
5431 3' -61.1 NC_001798.1 + 134012 0.66 0.728038
Target:  5'- gGCUGCCcccGCGca-CGCGCGACuGCCu -3'
miRNA:   3'- gCGGCGGa--UGCuacGCGCGCUG-CGGc -5'
5431 3' -61.1 NC_001798.1 + 3356 0.66 0.728038
Target:  5'- uCGCCGUCgugGCGGUugGCGuCGcCGCCGu -3'
miRNA:   3'- -GCGGCGGa--UGCUAcgCGC-GCuGCGGC- -5'
5431 3' -61.1 NC_001798.1 + 117967 0.66 0.727095
Target:  5'- cCGCUGCCaGCGAcGUGCaguuuaaGCGccCGCCGg -3'
miRNA:   3'- -GCGGCGGaUGCUaCGCG-------CGCu-GCGGC- -5'
5431 3' -61.1 NC_001798.1 + 21655 0.66 0.726152
Target:  5'- uCGCCGCCgGCGucucugucucgcUGUGgcccccuuCGCGAUGCCGc -3'
miRNA:   3'- -GCGGCGGaUGCu-----------ACGC--------GCGCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.