miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5431 5' -55.7 NC_001798.1 + 128145 0.66 0.926814
Target:  5'- gUUCGaGCgCCACcugCGCGGCCuGCUGCg -3'
miRNA:   3'- -AGGCcCG-GGUGua-GUGCUGGuUGAUG- -5'
5431 5' -55.7 NC_001798.1 + 58379 0.66 0.926814
Target:  5'- aCCGGGCCUgacggagccGCGUCA-GACCcucGCgcgGCg -3'
miRNA:   3'- aGGCCCGGG---------UGUAGUgCUGGu--UGa--UG- -5'
5431 5' -55.7 NC_001798.1 + 81534 0.66 0.926814
Target:  5'- aCCGcGGCCCA--UCG-GGCCGgcaGCUACg -3'
miRNA:   3'- aGGC-CCGGGUguAGUgCUGGU---UGAUG- -5'
5431 5' -55.7 NC_001798.1 + 111031 0.66 0.926814
Target:  5'- gUCCGuGGCCgGCGUacaaCACGcCCAGgaACg -3'
miRNA:   3'- -AGGC-CCGGgUGUA----GUGCuGGUUgaUG- -5'
5431 5' -55.7 NC_001798.1 + 114437 0.66 0.926814
Target:  5'- gCCGGGCCCugAaCGCcGCCuuCaGCc -3'
miRNA:   3'- aGGCCCGGGugUaGUGcUGGuuGaUG- -5'
5431 5' -55.7 NC_001798.1 + 97710 0.66 0.926814
Target:  5'- cUCGGGCgCUGCGUgCGCGAgCAGCg-- -3'
miRNA:   3'- aGGCCCG-GGUGUA-GUGCUgGUUGaug -5'
5431 5' -55.7 NC_001798.1 + 104912 0.66 0.926814
Target:  5'- -gCuGGCCCACGUaCAgcCGGCCGcacgACUGCa -3'
miRNA:   3'- agGcCCGGGUGUA-GU--GCUGGU----UGAUG- -5'
5431 5' -55.7 NC_001798.1 + 112187 0.66 0.926814
Target:  5'- -aCGGGCCgCACGUCccGCaGGCCGcGCUGg -3'
miRNA:   3'- agGCCCGG-GUGUAG--UG-CUGGU-UGAUg -5'
5431 5' -55.7 NC_001798.1 + 125787 0.66 0.926814
Target:  5'- cUCCGGGCCgAgGUguacaGgGACCAgacccugcaGCUACa -3'
miRNA:   3'- -AGGCCCGGgUgUAg----UgCUGGU---------UGAUG- -5'
5431 5' -55.7 NC_001798.1 + 32007 0.66 0.923572
Target:  5'- gCCGGGCCCcggacucggacucggGCGacCGCGGCCAcggGCcGCu -3'
miRNA:   3'- aGGCCCGGG---------------UGUa-GUGCUGGU---UGaUG- -5'
5431 5' -55.7 NC_001798.1 + 49942 0.66 0.923572
Target:  5'- aUCCGGGCCaagUuggacucguacuccaGCGUCGCGACCucggaggGCg -3'
miRNA:   3'- -AGGCCCGG---G---------------UGUAGUGCUGGuuga---UG- -5'
5431 5' -55.7 NC_001798.1 + 104600 0.66 0.921363
Target:  5'- cCCGGGgCCGCcgguagcaccccGUgGCGcACCAACgugGCg -3'
miRNA:   3'- aGGCCCgGGUG------------UAgUGC-UGGUUGa--UG- -5'
5431 5' -55.7 NC_001798.1 + 123467 0.66 0.921363
Target:  5'- cCCgGGGCCCGaagccgaccuCGUCGCGcgcaucGCCAACUc- -3'
miRNA:   3'- aGG-CCCGGGU----------GUAGUGC------UGGUUGAug -5'
5431 5' -55.7 NC_001798.1 + 78998 0.66 0.921363
Target:  5'- --gGGGuUCCGCGccaugCACGAgCAGCUGCg -3'
miRNA:   3'- aggCCC-GGGUGUa----GUGCUgGUUGAUG- -5'
5431 5' -55.7 NC_001798.1 + 51216 0.66 0.921363
Target:  5'- uUCCGcGCCCcaggucCGUUACGGCCAGgaGCc -3'
miRNA:   3'- -AGGCcCGGGu-----GUAGUGCUGGUUgaUG- -5'
5431 5' -55.7 NC_001798.1 + 95429 0.66 0.915674
Target:  5'- cCUGGGCCC-CcgCACccAgCAGCUGCa -3'
miRNA:   3'- aGGCCCGGGuGuaGUGc-UgGUUGAUG- -5'
5431 5' -55.7 NC_001798.1 + 58669 0.66 0.915092
Target:  5'- cCCGaGGCCCGCcaccaccgccgccGUCAgGGCCGcgGCgGCg -3'
miRNA:   3'- aGGC-CCGGGUG-------------UAGUgCUGGU--UGaUG- -5'
5431 5' -55.7 NC_001798.1 + 150567 0.66 0.909746
Target:  5'- cCCgGGGCCCGCGggGCGGCgcggaGACgGCg -3'
miRNA:   3'- aGG-CCCGGGUGUagUGCUGg----UUGaUG- -5'
5431 5' -55.7 NC_001798.1 + 2093 0.66 0.909746
Target:  5'- cUCCgggggGGGCCCGCccccggCGCGGCCcGCgGCc -3'
miRNA:   3'- -AGG-----CCCGGGUGua----GUGCUGGuUGaUG- -5'
5431 5' -55.7 NC_001798.1 + 31668 0.66 0.909746
Target:  5'- gCCGGGCCCGCGcCGCccGCCG--UGCc -3'
miRNA:   3'- aGGCCCGGGUGUaGUGc-UGGUugAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.