miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5432 3' -63.3 NC_001798.1 + 96153 0.66 0.633273
Target:  5'- gGCCGGGugacUCgccaugGCGGccGCGCCCccgGCCGc -3'
miRNA:   3'- -CGGCCU----AGa-----CGCCccCGCGGGa--UGGC- -5'
5432 3' -63.3 NC_001798.1 + 29310 0.66 0.633273
Target:  5'- cGCCGGGUggGUGGGcugaucGGC-CCCUAUUGg -3'
miRNA:   3'- -CGGCCUAgaCGCCC------CCGcGGGAUGGC- -5'
5432 3' -63.3 NC_001798.1 + 153682 0.66 0.633273
Target:  5'- gGCgGGGaC-GCGGGGGCcGCC--GCCGg -3'
miRNA:   3'- -CGgCCUaGaCGCCCCCG-CGGgaUGGC- -5'
5432 3' -63.3 NC_001798.1 + 15681 0.66 0.623597
Target:  5'- cGUCGGGgggaguaguggUUGCGGGGGCGgUCgguuCCGc -3'
miRNA:   3'- -CGGCCUa----------GACGCCCCCGCgGGau--GGC- -5'
5432 3' -63.3 NC_001798.1 + 91568 0.66 0.623597
Target:  5'- -gUGGuGUCcGCGGGGGCGCCgcgguuucuuuUUAUCGg -3'
miRNA:   3'- cgGCC-UAGaCGCCCCCGCGG-----------GAUGGC- -5'
5432 3' -63.3 NC_001798.1 + 25638 0.66 0.623597
Target:  5'- cGCCGag-C-GCGGcGGGCuGUCCUGCCu -3'
miRNA:   3'- -CGGCcuaGaCGCC-CCCG-CGGGAUGGc -5'
5432 3' -63.3 NC_001798.1 + 25815 0.66 0.623597
Target:  5'- cCUGGggCUGCuGGccGGCGCCUgcgACCGc -3'
miRNA:   3'- cGGCCuaGACGcCC--CCGCGGGa--UGGC- -5'
5432 3' -63.3 NC_001798.1 + 48128 0.66 0.62263
Target:  5'- gGCCGGGuucaacaagcgcgUCUucugcgccGCGGucGGGCGCCUggcgGCCa -3'
miRNA:   3'- -CGGCCU-------------AGA--------CGCC--CCCGCGGGa---UGGc -5'
5432 3' -63.3 NC_001798.1 + 9127 0.66 0.613927
Target:  5'- cGCCGcgagguGGUCUGCGGcacgcGGGCgcggcgccGCCCgcGCCGg -3'
miRNA:   3'- -CGGC------CUAGACGCC-----CCCG--------CGGGa-UGGC- -5'
5432 3' -63.3 NC_001798.1 + 2263 0.66 0.612961
Target:  5'- cGCCGGGgg-GCGGGGcggcgcaGCGCgCgGCCa -3'
miRNA:   3'- -CGGCCUagaCGCCCC-------CGCGgGaUGGc -5'
5432 3' -63.3 NC_001798.1 + 86265 0.66 0.611029
Target:  5'- gGCCGGGg--GCGcGGGCGCaccggcggggaaugCCUGCUGu -3'
miRNA:   3'- -CGGCCUagaCGCcCCCGCG--------------GGAUGGC- -5'
5432 3' -63.3 NC_001798.1 + 134679 0.66 0.60427
Target:  5'- -gCGGGUCacgGCGcGGGUGCUgCUGCCGc -3'
miRNA:   3'- cgGCCUAGa--CGCcCCCGCGG-GAUGGC- -5'
5432 3' -63.3 NC_001798.1 + 12708 0.66 0.60427
Target:  5'- uGCUGGGggcgGCGGGGGCGUggUGCgGc -3'
miRNA:   3'- -CGGCCUaga-CGCCCCCGCGggAUGgC- -5'
5432 3' -63.3 NC_001798.1 + 56760 0.66 0.60234
Target:  5'- aGCUGGcaggugaaggUGCGcGGGGgGCCCUgGCCGc -3'
miRNA:   3'- -CGGCCuag-------ACGC-CCCCgCGGGA-UGGC- -5'
5432 3' -63.3 NC_001798.1 + 150855 0.66 0.598484
Target:  5'- gGUCGGGUCgcgGCGGgcugggagguuccgcGGGuCGCCCccgcACCGc -3'
miRNA:   3'- -CGGCCUAGa--CGCC---------------CCC-GCGGGa---UGGC- -5'
5432 3' -63.3 NC_001798.1 + 25152 0.66 0.594631
Target:  5'- gGCCGccccUCccGCGGGGGCcgcgccccccGCCCcGCCGa -3'
miRNA:   3'- -CGGCcu--AGa-CGCCCCCG----------CGGGaUGGC- -5'
5432 3' -63.3 NC_001798.1 + 71217 0.66 0.594631
Target:  5'- aCCGGccugCUGCagcuaGGGGaGcCGCCCUccGCCGg -3'
miRNA:   3'- cGGCCua--GACG-----CCCC-C-GCGGGA--UGGC- -5'
5432 3' -63.3 NC_001798.1 + 134464 0.66 0.585016
Target:  5'- cCCGGcgCgcgguugGCGuGGGcGCGCCUgGCCGc -3'
miRNA:   3'- cGGCCuaGa------CGC-CCC-CGCGGGaUGGC- -5'
5432 3' -63.3 NC_001798.1 + 71387 0.66 0.585016
Target:  5'- gGCCcuggagGGGUUuuuggugGCGGGGGUGCCC-GCgCGg -3'
miRNA:   3'- -CGG------CCUAGa------CGCCCCCGCGGGaUG-GC- -5'
5432 3' -63.3 NC_001798.1 + 51824 0.66 0.585016
Target:  5'- gGgUGGGUCUGCGGGacGCGCCUgcacaCGg -3'
miRNA:   3'- -CgGCCUAGACGCCCc-CGCGGGaug--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.