miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5433 5' -58.2 NC_001798.1 + 82287 0.65 0.852866
Target:  5'- aGCGAGCCUUUgugcgguuGgGUCgUgcccggaggcccggUUGCCCGCCg -3'
miRNA:   3'- aCGCUCGGGAG--------UgCAG-A--------------AGCGGGUGG- -5'
5433 5' -58.2 NC_001798.1 + 102985 0.66 0.85055
Target:  5'- gUGUGAGCgCCUcCACGcCgggggcccaggugCGCCCgGCCa -3'
miRNA:   3'- -ACGCUCG-GGA-GUGCaGaa-----------GCGGG-UGG- -5'
5433 5' -58.2 NC_001798.1 + 2220 0.66 0.85055
Target:  5'- aGCGGGCCCgaggCGCGcagcgggccgaaggCggcgggCGCgCCGCCg -3'
miRNA:   3'- aCGCUCGGGa---GUGCa-------------Gaa----GCG-GGUGG- -5'
5433 5' -58.2 NC_001798.1 + 47415 0.66 0.847436
Target:  5'- cGCaGGCCCUCGCugcUCUccCGuacCCCGCCg -3'
miRNA:   3'- aCGcUCGGGAGUGc--AGAa-GC---GGGUGG- -5'
5433 5' -58.2 NC_001798.1 + 49873 0.66 0.847436
Target:  5'- gGCGc-CCCUCACGaCccCGCCCGuCCu -3'
miRNA:   3'- aCGCucGGGAGUGCaGaaGCGGGU-GG- -5'
5433 5' -58.2 NC_001798.1 + 104571 0.66 0.847436
Target:  5'- cGCGGGUgCUgGUGUCUcggggaacgUCGCCCgggGCCg -3'
miRNA:   3'- aCGCUCGgGAgUGCAGA---------AGCGGG---UGG- -5'
5433 5' -58.2 NC_001798.1 + 110169 0.66 0.847436
Target:  5'- -aCGGGCgUUgACGUCcgcCGCCCGCUg -3'
miRNA:   3'- acGCUCGgGAgUGCAGaa-GCGGGUGG- -5'
5433 5' -58.2 NC_001798.1 + 15843 0.66 0.83952
Target:  5'- gGgGGGCCCgaACGUCggggUCGaCCC-CCu -3'
miRNA:   3'- aCgCUCGGGagUGCAGa---AGC-GGGuGG- -5'
5433 5' -58.2 NC_001798.1 + 28074 0.66 0.83952
Target:  5'- aGCGcGCCggcCGCGUCcUCGCuCCugCg -3'
miRNA:   3'- aCGCuCGGga-GUGCAGaAGCG-GGugG- -5'
5433 5' -58.2 NC_001798.1 + 30407 0.66 0.83952
Target:  5'- gGCGGGCCUgauggaCGCGgccaCGCCC-CCg -3'
miRNA:   3'- aCGCUCGGGa-----GUGCagaaGCGGGuGG- -5'
5433 5' -58.2 NC_001798.1 + 35470 0.66 0.83952
Target:  5'- cUGCuGGCCCgcggCcCGUCUgcUgGCCCGCg -3'
miRNA:   3'- -ACGcUCGGGa---GuGCAGA--AgCGGGUGg -5'
5433 5' -58.2 NC_001798.1 + 91990 0.66 0.83952
Target:  5'- gGCGGGCCau----UC-UCGCCCACCc -3'
miRNA:   3'- aCGCUCGGgagugcAGaAGCGGGUGG- -5'
5433 5' -58.2 NC_001798.1 + 150010 0.66 0.83952
Target:  5'- aGCG-GCCCguggcCGCGg--UCGCCCGaguCCg -3'
miRNA:   3'- aCGCuCGGGa----GUGCagaAGCGGGU---GG- -5'
5433 5' -58.2 NC_001798.1 + 41805 0.66 0.83952
Target:  5'- -cCGGGCCgUCGCG-CgacUUGCCCuGCCg -3'
miRNA:   3'- acGCUCGGgAGUGCaGa--AGCGGG-UGG- -5'
5433 5' -58.2 NC_001798.1 + 1155 0.66 0.831423
Target:  5'- gGCcAGCCC-CGCGgcggUC-CCCACCa -3'
miRNA:   3'- aCGcUCGGGaGUGCaga-AGcGGGUGG- -5'
5433 5' -58.2 NC_001798.1 + 23664 0.66 0.831423
Target:  5'- cGcCGGGCCCgCGCGgcggUgGCCgGCCg -3'
miRNA:   3'- aC-GCUCGGGaGUGCaga-AgCGGgUGG- -5'
5433 5' -58.2 NC_001798.1 + 107206 0.66 0.831423
Target:  5'- gGCGuucguGGCCCUCAUGcCcccgaccgCGCCCGgCa -3'
miRNA:   3'- aCGC-----UCGGGAGUGCaGaa------GCGGGUgG- -5'
5433 5' -58.2 NC_001798.1 + 151225 0.66 0.831423
Target:  5'- cGCGGGgCCgucCGCGgg-UUGCCCGuCCa -3'
miRNA:   3'- aCGCUCgGGa--GUGCagaAGCGGGU-GG- -5'
5433 5' -58.2 NC_001798.1 + 118068 0.66 0.831423
Target:  5'- aGCGAccccGCCCUgcUACG-CagCGCCCGCg -3'
miRNA:   3'- aCGCU----CGGGA--GUGCaGaaGCGGGUGg -5'
5433 5' -58.2 NC_001798.1 + 25890 0.66 0.823151
Target:  5'- cGaCGGGCCCguggucUCGCGgcagcaCGCCUACCu -3'
miRNA:   3'- aC-GCUCGGG------AGUGCagaa--GCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.