miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5436 3' -59.3 NC_001798.1 + 117624 0.66 0.763988
Target:  5'- cACCCCCGuGGCCACggacaucaACUAcuuucGCC-GGCc -3'
miRNA:   3'- uUGGGGGU-CCGGUGg-------UGAU-----UGGuCCG- -5'
5436 3' -59.3 NC_001798.1 + 69816 0.66 0.763988
Target:  5'- cGCCCCaCGgaacGGCCGCgauaCACUugguCCGGGCc -3'
miRNA:   3'- uUGGGG-GU----CCGGUG----GUGAuu--GGUCCG- -5'
5436 3' -59.3 NC_001798.1 + 62439 0.66 0.763988
Target:  5'- cAGCCCCCGGacGUCGCCGgugGGCCGcGCg -3'
miRNA:   3'- -UUGGGGGUC--CGGUGGUga-UUGGUcCG- -5'
5436 3' -59.3 NC_001798.1 + 15557 0.66 0.763988
Target:  5'- --gCCCCGGGCguuGCCGCc-GCCGcGGCg -3'
miRNA:   3'- uugGGGGUCCGg--UGGUGauUGGU-CCG- -5'
5436 3' -59.3 NC_001798.1 + 46111 0.66 0.763049
Target:  5'- cGugCCCggaGGGCCAgCGCguaggcaUGACCAGGa -3'
miRNA:   3'- -UugGGGg--UCCGGUgGUG-------AUUGGUCCg -5'
5436 3' -59.3 NC_001798.1 + 33209 0.66 0.761165
Target:  5'- cACCCCCgAGGCCugUugguCUuuaucauagaacagAGCCGGGg -3'
miRNA:   3'- uUGGGGG-UCCGGugGu---GA--------------UUGGUCCg -5'
5436 3' -59.3 NC_001798.1 + 23298 0.66 0.761165
Target:  5'- cGACCCCCGGcGCCccgccgacACCACcaccACCAccaccaccgccgccGGCg -3'
miRNA:   3'- -UUGGGGGUC-CGG--------UGGUGau--UGGU--------------CCG- -5'
5436 3' -59.3 NC_001798.1 + 83747 0.66 0.760222
Target:  5'- cGGCCCCCAGaaacagccccGCCGCCAgcaacagaagcGCCGGGg -3'
miRNA:   3'- -UUGGGGGUC----------CGGUGGUgau--------UGGUCCg -5'
5436 3' -59.3 NC_001798.1 + 39837 0.66 0.75454
Target:  5'- cGGCUCCCc-GCCG-CGCU-GCCGGGCg -3'
miRNA:   3'- -UUGGGGGucCGGUgGUGAuUGGUCCG- -5'
5436 3' -59.3 NC_001798.1 + 90969 0.66 0.75454
Target:  5'- gAACCCCUcggGGGCaugguccgCACCGCcccaCAGGCg -3'
miRNA:   3'- -UUGGGGG---UCCG--------GUGGUGauugGUCCG- -5'
5436 3' -59.3 NC_001798.1 + 98605 0.66 0.75454
Target:  5'- cGGCCCCgGcGGCCccCCGCgccUCGGGCg -3'
miRNA:   3'- -UUGGGGgU-CCGGu-GGUGauuGGUCCG- -5'
5436 3' -59.3 NC_001798.1 + 123758 0.66 0.75454
Target:  5'- cACCCCCGGaccCCGCUGCUGugCAcccuagccuucGGCc -3'
miRNA:   3'- uUGGGGGUCc--GGUGGUGAUugGU-----------CCG- -5'
5436 3' -59.3 NC_001798.1 + 7182 0.66 0.75454
Target:  5'- gGGCCCCCGcaccggggcGGCgACCAUgauCC-GGCg -3'
miRNA:   3'- -UUGGGGGU---------CCGgUGGUGauuGGuCCG- -5'
5436 3' -59.3 NC_001798.1 + 27754 0.66 0.75454
Target:  5'- gGGCCcgcaacacggCCCGGGCUGCgCACgccAGCCGGGa -3'
miRNA:   3'- -UUGG----------GGGUCCGGUG-GUGa--UUGGUCCg -5'
5436 3' -59.3 NC_001798.1 + 75980 0.66 0.75454
Target:  5'- gAugCCCguGcCCGCCGCc--CCGGGCg -3'
miRNA:   3'- -UugGGGguCcGGUGGUGauuGGUCCG- -5'
5436 3' -59.3 NC_001798.1 + 147065 0.66 0.75454
Target:  5'- gGGCCCCCGcaccucGGCgGCCGCccccuCCGGcGCc -3'
miRNA:   3'- -UUGGGGGU------CCGgUGGUGauu--GGUC-CG- -5'
5436 3' -59.3 NC_001798.1 + 122644 0.66 0.751685
Target:  5'- cGGCCCgcgcaucuuCCAGcGCCugCGCUAcgacuuuggcccccACCAGaGCg -3'
miRNA:   3'- -UUGGG---------GGUC-CGGugGUGAU--------------UGGUC-CG- -5'
5436 3' -59.3 NC_001798.1 + 138159 0.66 0.750731
Target:  5'- cGCCCCCGGGUCcugggggcgcgacCCGC-GGCCGGuGCc -3'
miRNA:   3'- uUGGGGGUCCGGu------------GGUGaUUGGUC-CG- -5'
5436 3' -59.3 NC_001798.1 + 112182 0.66 0.744986
Target:  5'- -cCCCCaCGGGCCGcacgucCCGCaGGCCGcgcuGGCg -3'
miRNA:   3'- uuGGGG-GUCCGGU------GGUGaUUGGU----CCG- -5'
5436 3' -59.3 NC_001798.1 + 87326 0.66 0.744986
Target:  5'- gGACCUCCuGGCCGauaCGCUcGGCCAGc- -3'
miRNA:   3'- -UUGGGGGuCCGGUg--GUGA-UUGGUCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.