miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5436 5' -57.9 NC_001798.1 + 25715 0.65 0.870321
Target:  5'- cGGGCaacuggACCGGCGcccccgacgucucgGCGcUGGGCGCg -3'
miRNA:   3'- -CCCGguag--UGGCCGU--------------UGC-ACUCGCGg -5'
5436 5' -57.9 NC_001798.1 + 61300 0.65 0.869598
Target:  5'- gGGGUCGUCGCCG-CAGCcacuguacacagGGGCGgCg -3'
miRNA:   3'- -CCCGGUAGUGGCcGUUGca----------CUCGCgG- -5'
5436 5' -57.9 NC_001798.1 + 81142 0.66 0.86522
Target:  5'- cGGGCCAUCcuCgGGCGGCccuucGA-CGCCu -3'
miRNA:   3'- -CCCGGUAGu-GgCCGUUGca---CUcGCGG- -5'
5436 5' -57.9 NC_001798.1 + 114770 0.66 0.86522
Target:  5'- cGGCCAUCGCCG-CGAgGccaucGAG-GCCu -3'
miRNA:   3'- cCCGGUAGUGGCcGUUgCa----CUCgCGG- -5'
5436 5' -57.9 NC_001798.1 + 6370 0.66 0.86522
Target:  5'- cGGGCCGggggGCCGGgGGgcCG-GGGgGCCg -3'
miRNA:   3'- -CCCGGUag--UGGCCgUU--GCaCUCgCGG- -5'
5436 5' -57.9 NC_001798.1 + 25244 0.66 0.86522
Target:  5'- aGGGCCccgaccCGCagGGCGGC-UG-GCGCCg -3'
miRNA:   3'- -CCCGGua----GUGg-CCGUUGcACuCGCGG- -5'
5436 5' -57.9 NC_001798.1 + 49455 0.66 0.86522
Target:  5'- cGGCCcugUACCGGU-ACcUGcGCGCCa -3'
miRNA:   3'- cCCGGua-GUGGCCGuUGcACuCGCGG- -5'
5436 5' -57.9 NC_001798.1 + 76705 0.66 0.86522
Target:  5'- aGGCgCGcUC-CCGGCuuCGgGAGCGCg -3'
miRNA:   3'- cCCG-GU-AGuGGCCGuuGCaCUCGCGg -5'
5436 5' -57.9 NC_001798.1 + 85987 0.66 0.86522
Target:  5'- aGGCCGcCGCCGG-GGCGcuGGCGCa -3'
miRNA:   3'- cCCGGUaGUGGCCgUUGCacUCGCGg -5'
5436 5' -57.9 NC_001798.1 + 9528 0.66 0.86522
Target:  5'- gGGGCCcGUCGCCgaGGCccggcuuuuAACcgcccgccagGAGCGCCu -3'
miRNA:   3'- -CCCGG-UAGUGG--CCG---------UUGca--------CUCGCGG- -5'
5436 5' -57.9 NC_001798.1 + 124765 0.66 0.86522
Target:  5'- cGGGCUcgGUCGCCuuGCgGAUGUGGGCcguguaGCCu -3'
miRNA:   3'- -CCCGG--UAGUGGc-CG-UUGCACUCG------CGG- -5'
5436 5' -57.9 NC_001798.1 + 26375 0.66 0.864484
Target:  5'- cGGGCCG-CGgCGGgAguucugcGCGcGGGCGCUg -3'
miRNA:   3'- -CCCGGUaGUgGCCgU-------UGCaCUCGCGG- -5'
5436 5' -57.9 NC_001798.1 + 12698 0.66 0.857764
Target:  5'- aGGCCcggGUUGCUGGgGGCGgcggGGGCGUg -3'
miRNA:   3'- cCCGG---UAGUGGCCgUUGCa---CUCGCGg -5'
5436 5' -57.9 NC_001798.1 + 107876 0.66 0.857764
Target:  5'- gGGGCCAggGCUGGCAcCGUaucAGCaCCc -3'
miRNA:   3'- -CCCGGUagUGGCCGUuGCAc--UCGcGG- -5'
5436 5' -57.9 NC_001798.1 + 117566 0.66 0.857764
Target:  5'- aGGuGCCGcggcgCGCCGGCAugGaccacGGGCaggauGCCg -3'
miRNA:   3'- -CC-CGGUa----GUGGCCGUugCa----CUCG-----CGG- -5'
5436 5' -57.9 NC_001798.1 + 16138 0.66 0.857764
Target:  5'- gGGGCggaAUaccaUACCGGgGGCaccGAGCGCCa -3'
miRNA:   3'- -CCCGg--UA----GUGGCCgUUGca-CUCGCGG- -5'
5436 5' -57.9 NC_001798.1 + 53152 0.66 0.857764
Target:  5'- cGGCCAaccUCAUccgCGGCGccaACGcGGGCGUCc -3'
miRNA:   3'- cCCGGU---AGUG---GCCGU---UGCaCUCGCGG- -5'
5436 5' -57.9 NC_001798.1 + 91096 0.66 0.857764
Target:  5'- cGGCCGUCGuggaccCCGGUGcgcugcuccGCGgGGGCGUCc -3'
miRNA:   3'- cCCGGUAGU------GGCCGU---------UGCaCUCGCGG- -5'
5436 5' -57.9 NC_001798.1 + 92941 0.66 0.857008
Target:  5'- cGGGCCcgcCGCCguGGCccugcgugcccggAACGUGGaCGCCg -3'
miRNA:   3'- -CCCGGua-GUGG--CCG-------------UUGCACUcGCGG- -5'
5436 5' -57.9 NC_001798.1 + 53245 0.66 0.857008
Target:  5'- cGGCCGUgggcgucCugCGGCAGC----GCGCCg -3'
miRNA:   3'- cCCGGUA-------GugGCCGUUGcacuCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.