miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5437 3' -63.8 NC_001798.1 + 76555 0.66 0.568789
Target:  5'- aCAGCgacGCGGCCuuCGucCCGGcgaccGGCCCCg -3'
miRNA:   3'- -GUCG---CGCCGGugGU--GGCCu----UCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 36047 0.66 0.568789
Target:  5'- gCGGCgGUGGUCggcguGCUGCCGGAGGCUgCg -3'
miRNA:   3'- -GUCG-CGCCGG-----UGGUGGCCUUCGGgGa -5'
5437 3' -63.8 NC_001798.1 + 83759 0.66 0.568789
Target:  5'- aCAGCcCcGCCGCCagcaacagaagcGCCGGggGgCCCg -3'
miRNA:   3'- -GUCGcGcCGGUGG------------UGGCCuuCgGGGa -5'
5437 3' -63.8 NC_001798.1 + 96991 0.66 0.568789
Target:  5'- gCGGCGgGGCCAggGCCGGcccGCCgCCc -3'
miRNA:   3'- -GUCGCgCCGGUggUGGCCuu-CGG-GGa -5'
5437 3' -63.8 NC_001798.1 + 3994 0.66 0.568789
Target:  5'- -cGcCGgGGCCGCCcgGCCGuGAAGCggCCCg -3'
miRNA:   3'- guC-GCgCCGGUGG--UGGC-CUUCG--GGGa -5'
5437 3' -63.8 NC_001798.1 + 21038 0.66 0.568789
Target:  5'- gCGGCGCccGGCCugCgagaaaGCgCGGAuguugggaucggGGCCCCg -3'
miRNA:   3'- -GUCGCG--CCGGugG------UG-GCCU------------UCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 24195 0.66 0.568789
Target:  5'- uGGCGCacguGGCgGCCGCCGuGGccaugAGCCgCCg -3'
miRNA:   3'- gUCGCG----CCGgUGGUGGC-CU-----UCGG-GGa -5'
5437 3' -63.8 NC_001798.1 + 28229 0.66 0.568789
Target:  5'- -cGCGCcuGCCGCCGCCu---GCCCCc -3'
miRNA:   3'- guCGCGc-CGGUGGUGGccuuCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 52597 0.66 0.568789
Target:  5'- -uGCGUGGCCcugGCCGCguuugacggCGGGucgacGGCCCCc -3'
miRNA:   3'- guCGCGCCGG---UGGUG---------GCCU-----UCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 56564 0.66 0.568789
Target:  5'- -cGCGaCGGCCACCuucuccGCCGGcGAGgagucgucCCCCa -3'
miRNA:   3'- guCGC-GCCGGUGG------UGGCC-UUC--------GGGGa -5'
5437 3' -63.8 NC_001798.1 + 59481 0.66 0.568789
Target:  5'- aGGCGUucGGCCACCACCcGuuGCCgUCa -3'
miRNA:   3'- gUCGCG--CCGGUGGUGGcCuuCGG-GGa -5'
5437 3' -63.8 NC_001798.1 + 79516 0.66 0.567827
Target:  5'- aGGCGUaucuGCgCGCCGgCGGAgacccggGGCCCCUg -3'
miRNA:   3'- gUCGCGc---CG-GUGGUgGCCU-------UCGGGGA- -5'
5437 3' -63.8 NC_001798.1 + 31993 0.66 0.559179
Target:  5'- gAGgGCGG-CGCCgcGCCGG--GCCCCg -3'
miRNA:   3'- gUCgCGCCgGUGG--UGGCCuuCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 51186 0.66 0.559179
Target:  5'- gGGCgGCGGCgCccccCCGCCGGgcGUCCUUu -3'
miRNA:   3'- gUCG-CGCCG-Gu---GGUGGCCuuCGGGGA- -5'
5437 3' -63.8 NC_001798.1 + 74776 0.66 0.559179
Target:  5'- -cGcCGCGGCCucggguCCACCGcacGccGCCCCg -3'
miRNA:   3'- guC-GCGCCGGu-----GGUGGC---CuuCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 84509 0.66 0.559179
Target:  5'- -cGgGCGGCCGCCGuaGGGcuuCCCCa -3'
miRNA:   3'- guCgCGCCGGUGGUggCCUuc-GGGGa -5'
5437 3' -63.8 NC_001798.1 + 145407 0.66 0.559179
Target:  5'- aAGCGCGcccccGCCcgGCCGCCGcgcGCCCCc -3'
miRNA:   3'- gUCGCGC-----CGG--UGGUGGCcuuCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 72831 0.66 0.559179
Target:  5'- cCGGCuaucaGGCCGCaCGCgCGGcacGGGCCCCg -3'
miRNA:   3'- -GUCGcg---CCGGUG-GUG-GCC---UUCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 78156 0.66 0.559179
Target:  5'- gAGCGUgcccGGCCugCGCCGGuacGUgCCg -3'
miRNA:   3'- gUCGCG----CCGGugGUGGCCuu-CGgGGa -5'
5437 3' -63.8 NC_001798.1 + 3372 0.66 0.559179
Target:  5'- uGGCGUcGCCGCCGucgUCGGGGguucgcGCCCCg -3'
miRNA:   3'- gUCGCGcCGGUGGU---GGCCUU------CGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.