miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5437 3' -63.8 NC_001798.1 + 134197 0.66 0.559179
Target:  5'- ----nCGGCCGCCuccCCGcuGGAGCCCCUg -3'
miRNA:   3'- gucgcGCCGGUGGu--GGC--CUUCGGGGA- -5'
5437 3' -63.8 NC_001798.1 + 13676 0.66 0.558221
Target:  5'- cUAGCaG-GGCCGCCgucccgacGCCGGAGgucaaacGCCCCa -3'
miRNA:   3'- -GUCG-CgCCGGUGG--------UGGCCUU-------CGGGGa -5'
5437 3' -63.8 NC_001798.1 + 51956 0.66 0.558221
Target:  5'- uCAGCGCGGgaggggccgcgccCCcCCACCcc-GGCCCCg -3'
miRNA:   3'- -GUCGCGCC-------------GGuGGUGGccuUCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 138708 0.66 0.556305
Target:  5'- -cGCGaCGGCCagaucagaaGCC-CCGGGccggcgcgcuccgcGGCCCCg -3'
miRNA:   3'- guCGC-GCCGG---------UGGuGGCCU--------------UCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 978 0.66 0.549616
Target:  5'- -cGCGCGGCCAUCGCCGc--GUCUUc -3'
miRNA:   3'- guCGCGCCGGUGGUGGCcuuCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 73967 0.66 0.549616
Target:  5'- -cGCGCGGCCGCgGgcuCCGG--GCCgCCg -3'
miRNA:   3'- guCGCGCCGGUGgU---GGCCuuCGG-GGa -5'
5437 3' -63.8 NC_001798.1 + 96354 0.66 0.549616
Target:  5'- gCGGCaccuGCGGCCGggGCUGGAGGCUCa- -3'
miRNA:   3'- -GUCG----CGCCGGUggUGGCCUUCGGGga -5'
5437 3' -63.8 NC_001798.1 + 115712 0.66 0.549616
Target:  5'- gGGCGUGGCCGacgucgagcuucCCGgCGGcgAAGUCCCc -3'
miRNA:   3'- gUCGCGCCGGU------------GGUgGCC--UUCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 153006 0.66 0.549616
Target:  5'- gCGGgGCGGUCGCCGgggCGGAguccgGGCCCg- -3'
miRNA:   3'- -GUCgCGCCGGUGGUg--GCCU-----UCGGGga -5'
5437 3' -63.8 NC_001798.1 + 153256 0.66 0.549616
Target:  5'- -cGCGC-GCCGCCGCCGcc-GCCuCCUc -3'
miRNA:   3'- guCGCGcCGGUGGUGGCcuuCGG-GGA- -5'
5437 3' -63.8 NC_001798.1 + 75986 0.66 0.549616
Target:  5'- -cGUGCccGCCGCC-CCGGGcgccggcggcagGGCCCCg -3'
miRNA:   3'- guCGCGc-CGGUGGuGGCCU------------UCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 150172 0.66 0.546756
Target:  5'- gGGCG-GGCCGCCGCCcccuccgcggcgugGGggGCggcaCCg -3'
miRNA:   3'- gUCGCgCCGGUGGUGG--------------CCuuCGg---GGa -5'
5437 3' -63.8 NC_001798.1 + 22357 0.66 0.546756
Target:  5'- gGGCGgGGCCGcgcauaaugcgguuCCACCuGGggGCggaacCCCg -3'
miRNA:   3'- gUCGCgCCGGU--------------GGUGG-CCuuCG-----GGGa -5'
5437 3' -63.8 NC_001798.1 + 76340 0.66 0.540103
Target:  5'- cCAGCGgGGCCAgCCcCUaGAuGCCCCc -3'
miRNA:   3'- -GUCGCgCCGGU-GGuGGcCUuCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 78509 0.66 0.540103
Target:  5'- uGGUGCGcGCCAaacagcagCGCgCGGAGGCCaCCg -3'
miRNA:   3'- gUCGCGC-CGGUg-------GUG-GCCUUCGG-GGa -5'
5437 3' -63.8 NC_001798.1 + 85025 0.66 0.540103
Target:  5'- uGGCGaCGuCCGCC-CCGGggGUgCCg -3'
miRNA:   3'- gUCGC-GCcGGUGGuGGCCuuCGgGGa -5'
5437 3' -63.8 NC_001798.1 + 111012 0.66 0.540103
Target:  5'- -uGCGUGGCCGCgGCCaGgcGUCCg- -3'
miRNA:   3'- guCGCGCCGGUGgUGGcCuuCGGGga -5'
5437 3' -63.8 NC_001798.1 + 75458 0.66 0.540103
Target:  5'- cCGGgGUGGCCGgC-CCGGccgcGGCCCUg -3'
miRNA:   3'- -GUCgCGCCGGUgGuGGCCu---UCGGGGa -5'
5437 3' -63.8 NC_001798.1 + 150458 0.66 0.539155
Target:  5'- gGGCGaCGGCCGCgcgggggCGCgCGGcgcGCCCCg -3'
miRNA:   3'- gUCGC-GCCGGUG-------GUG-GCCuu-CGGGGa -5'
5437 3' -63.8 NC_001798.1 + 88757 0.66 0.539155
Target:  5'- gGGCGCgcaugccGGCCGCCuCCGGAaagucGGCCa-- -3'
miRNA:   3'- gUCGCG-------CCGGUGGuGGCCU-----UCGGgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.