miRNA display CGI


Results 1 - 20 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5437 5' -51.7 NC_001798.1 + 149934 0.66 0.985902
Target:  5'- -gGAGGAgGCGGcggcGACCGCgGCcugggACg -3'
miRNA:   3'- aaUUCCUgCGCCau--UUGGCGgUGa----UG- -5'
5437 5' -51.7 NC_001798.1 + 79872 0.66 0.985902
Target:  5'- ---uGGACGCGGc-GGCCGagCugUACg -3'
miRNA:   3'- aauuCCUGCGCCauUUGGCg-GugAUG- -5'
5437 5' -51.7 NC_001798.1 + 34606 0.66 0.985902
Target:  5'- --uGGGACGCGGgcaaaGGGCgGCgGCgGCg -3'
miRNA:   3'- aauUCCUGCGCCa----UUUGgCGgUGaUG- -5'
5437 5' -51.7 NC_001798.1 + 9151 0.66 0.985902
Target:  5'- ---cGGGCGCGGc--GCCGcCCGCg-- -3'
miRNA:   3'- aauuCCUGCGCCauuUGGC-GGUGaug -5'
5437 5' -51.7 NC_001798.1 + 69194 0.66 0.985902
Target:  5'- -gGGGGAgGuCGGUGGGgUGCCGCa-- -3'
miRNA:   3'- aaUUCCUgC-GCCAUUUgGCGGUGaug -5'
5437 5' -51.7 NC_001798.1 + 43083 0.66 0.984075
Target:  5'- ---cGGGCuCGGgc-GCCGCCGCcGCg -3'
miRNA:   3'- aauuCCUGcGCCauuUGGCGGUGaUG- -5'
5437 5' -51.7 NC_001798.1 + 9672 0.66 0.984075
Target:  5'- -gGAGGGCGCGGgaugggGGGCUcUCACgUGCg -3'
miRNA:   3'- aaUUCCUGCGCCa-----UUUGGcGGUG-AUG- -5'
5437 5' -51.7 NC_001798.1 + 26042 0.66 0.984075
Target:  5'- -gGAGGcCGCGcacgcgcgccuGUAccccgacgcGCCGCCGCUGCg -3'
miRNA:   3'- aaUUCCuGCGC-----------CAUu--------UGGCGGUGAUG- -5'
5437 5' -51.7 NC_001798.1 + 44851 0.66 0.984075
Target:  5'- gUGGGGugGgGGaAAGCCGgCGCa-- -3'
miRNA:   3'- aAUUCCugCgCCaUUUGGCgGUGaug -5'
5437 5' -51.7 NC_001798.1 + 65344 0.66 0.984075
Target:  5'- -aAGGGGCuucCGGUGguGGCCG-CGCUGCg -3'
miRNA:   3'- aaUUCCUGc--GCCAU--UUGGCgGUGAUG- -5'
5437 5' -51.7 NC_001798.1 + 98565 0.66 0.984075
Target:  5'- gUGGGGGCGCuGGU-GGCCGCgGugGCg -3'
miRNA:   3'- aAUUCCUGCG-CCAuUUGGCGgUgaUG- -5'
5437 5' -51.7 NC_001798.1 + 134687 0.66 0.984075
Target:  5'- ----cGGCGCGGgugcuGCUGCCGCgcgGCu -3'
miRNA:   3'- aauucCUGCGCCauu--UGGCGGUGa--UG- -5'
5437 5' -51.7 NC_001798.1 + 151218 0.66 0.984075
Target:  5'- -cAGGGAgCGCGGg--GCCGuCCGCg-- -3'
miRNA:   3'- aaUUCCU-GCGCCauuUGGC-GGUGaug -5'
5437 5' -51.7 NC_001798.1 + 22770 0.66 0.982074
Target:  5'- -cGAGGACGgGGgacgucuccGGGCCGCgGCggagACg -3'
miRNA:   3'- aaUUCCUGCgCCa--------UUUGGCGgUGa---UG- -5'
5437 5' -51.7 NC_001798.1 + 27331 0.66 0.982074
Target:  5'- -gGGGGugGCGGgGAACCGUgUGCggGCg -3'
miRNA:   3'- aaUUCCugCGCCaUUUGGCG-GUGa-UG- -5'
5437 5' -51.7 NC_001798.1 + 32022 0.66 0.982074
Target:  5'- ---cGGACuCGGgcGACCGCgGCcACg -3'
miRNA:   3'- aauuCCUGcGCCauUUGGCGgUGaUG- -5'
5437 5' -51.7 NC_001798.1 + 36040 0.66 0.982074
Target:  5'- -gGGGGugGCGGcGGuggucggcguGCUGCCggagGCUGCg -3'
miRNA:   3'- aaUUCCugCGCCaUU----------UGGCGG----UGAUG- -5'
5437 5' -51.7 NC_001798.1 + 46012 0.66 0.982074
Target:  5'- -gGAGGGCGUGGguccCCGCgACg-- -3'
miRNA:   3'- aaUUCCUGCGCCauuuGGCGgUGaug -5'
5437 5' -51.7 NC_001798.1 + 150809 0.66 0.982074
Target:  5'- --cGGGGCGCc----GCCGCUGCUGCu -3'
miRNA:   3'- aauUCCUGCGccauuUGGCGGUGAUG- -5'
5437 5' -51.7 NC_001798.1 + 48960 0.66 0.982074
Target:  5'- ---cGGACGCGGacgggGuuUCGCCACcGCc -3'
miRNA:   3'- aauuCCUGCGCCa----UuuGGCGGUGaUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.