miRNA display CGI


Results 21 - 40 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5437 5' -51.7 NC_001798.1 + 65690 0.66 0.981864
Target:  5'- --uGGGGCGCGugcucuguuuguuGUGcGCCGCCACc-- -3'
miRNA:   3'- aauUCCUGCGC-------------CAUuUGGCGGUGaug -5'
5437 5' -51.7 NC_001798.1 + 152946 0.66 0.97989
Target:  5'- -cGGGGAUgGCGGccgGGACCGCCuAUUAa -3'
miRNA:   3'- aaUUCCUG-CGCCa--UUUGGCGG-UGAUg -5'
5437 5' -51.7 NC_001798.1 + 105197 0.66 0.97989
Target:  5'- -cGGGGccCGCGGUGGGCgaCGgCGCUGCc -3'
miRNA:   3'- aaUUCCu-GCGCCAUUUG--GCgGUGAUG- -5'
5437 5' -51.7 NC_001798.1 + 17260 0.66 0.97989
Target:  5'- -cAAGGACGCGGUGugGACgGCgGuCUc- -3'
miRNA:   3'- aaUUCCUGCGCCAU--UUGgCGgU-GAug -5'
5437 5' -51.7 NC_001798.1 + 26455 0.66 0.97989
Target:  5'- ---cGGACGCGGgc--CCGCCcCcGCa -3'
miRNA:   3'- aauuCCUGCGCCauuuGGCGGuGaUG- -5'
5437 5' -51.7 NC_001798.1 + 74397 0.66 0.97989
Target:  5'- -cGGGGGCcguggcgccgGCGGaccuGACCGCCGCgGCc -3'
miRNA:   3'- aaUUCCUG----------CGCCau--UUGGCGGUGaUG- -5'
5437 5' -51.7 NC_001798.1 + 96185 0.66 0.97989
Target:  5'- ---cGGcCGCGGUuu-CCGagcCCACUGCg -3'
miRNA:   3'- aauuCCuGCGCCAuuuGGC---GGUGAUG- -5'
5437 5' -51.7 NC_001798.1 + 111775 0.66 0.97989
Target:  5'- gUUGGGGGCGCGGgugcCCGUgAUcACg -3'
miRNA:   3'- -AAUUCCUGCGCCauuuGGCGgUGaUG- -5'
5437 5' -51.7 NC_001798.1 + 154051 0.66 0.977513
Target:  5'- --cGGGGCGCGGcacggcUGGAgCGCCGggGCg -3'
miRNA:   3'- aauUCCUGCGCC------AUUUgGCGGUgaUG- -5'
5437 5' -51.7 NC_001798.1 + 85922 0.66 0.977513
Target:  5'- -cGAGGgcaaGCGCGGgggcggAGACaGCUGCUGCa -3'
miRNA:   3'- aaUUCC----UGCGCCa-----UUUGgCGGUGAUG- -5'
5437 5' -51.7 NC_001798.1 + 85221 0.66 0.977513
Target:  5'- -cGAGGACGUGGaGAGCgaCGUCGCg-- -3'
miRNA:   3'- aaUUCCUGCGCCaUUUG--GCGGUGaug -5'
5437 5' -51.7 NC_001798.1 + 660 0.67 0.974936
Target:  5'- ---cGGGCGCGGgaGACgUGCCGCc-- -3'
miRNA:   3'- aauuCCUGCGCCauUUG-GCGGUGaug -5'
5437 5' -51.7 NC_001798.1 + 12365 0.67 0.974936
Target:  5'- ---uGGGCGCGGUGgcuAAUCGUCGggACa -3'
miRNA:   3'- aauuCCUGCGCCAU---UUGGCGGUgaUG- -5'
5437 5' -51.7 NC_001798.1 + 2384 0.67 0.97215
Target:  5'- --cGGGGCGCaGUAGGCCuCCAggGCg -3'
miRNA:   3'- aauUCCUGCGcCAUUUGGcGGUgaUG- -5'
5437 5' -51.7 NC_001798.1 + 16229 0.67 0.971859
Target:  5'- gUGGGGGgGCGGUGGGgccggggcccuccCCGCCcaccuCUACc -3'
miRNA:   3'- aAUUCCUgCGCCAUUU-------------GGCGGu----GAUG- -5'
5437 5' -51.7 NC_001798.1 + 71340 0.67 0.971567
Target:  5'- cUUAccGACGCGGgguucacgcCCGCgCACUGCa -3'
miRNA:   3'- -AAUucCUGCGCCauuu-----GGCG-GUGAUG- -5'
5437 5' -51.7 NC_001798.1 + 117943 0.67 0.969147
Target:  5'- --cGGGAUcgGCGGUAuccacGGCCaCCGCUGCc -3'
miRNA:   3'- aauUCCUG--CGCCAU-----UUGGcGGUGAUG- -5'
5437 5' -51.7 NC_001798.1 + 110999 0.67 0.969147
Target:  5'- --cAGGcGCGCGGUAugcguGGCCGCgGCcagGCg -3'
miRNA:   3'- aauUCC-UGCGCCAU-----UUGGCGgUGa--UG- -5'
5437 5' -51.7 NC_001798.1 + 1988 0.67 0.968203
Target:  5'- -cGGGGGCGCGGUccaguugcccgcccAGGCgGCCGugGCg -3'
miRNA:   3'- aaUUCCUGCGCCA--------------UUUGgCGGUgaUG- -5'
5437 5' -51.7 NC_001798.1 + 32573 0.67 0.965921
Target:  5'- --cGGGcCGCGGcccccgcgugGAGCCGCCGCa-- -3'
miRNA:   3'- aauUCCuGCGCCa---------UUUGGCGGUGaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.