miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5437 5' -51.7 NC_001798.1 + 660 0.67 0.974936
Target:  5'- ---cGGGCGCGGgaGACgUGCCGCc-- -3'
miRNA:   3'- aauuCCUGCGCCauUUG-GCGGUGaug -5'
5437 5' -51.7 NC_001798.1 + 1988 0.67 0.968203
Target:  5'- -cGGGGGCGCGGUccaguugcccgcccAGGCgGCCGugGCg -3'
miRNA:   3'- aaUUCCUGCGCCA--------------UUUGgCGGUgaUG- -5'
5437 5' -51.7 NC_001798.1 + 2384 0.67 0.97215
Target:  5'- --cGGGGCGCaGUAGGCCuCCAggGCg -3'
miRNA:   3'- aauUCCUGCGcCAUUUGGcGGUgaUG- -5'
5437 5' -51.7 NC_001798.1 + 2506 0.71 0.849165
Target:  5'- --cGGGGCGCGGc-GGCCGCgGCgGCg -3'
miRNA:   3'- aauUCCUGCGCCauUUGGCGgUGaUG- -5'
5437 5' -51.7 NC_001798.1 + 2543 0.7 0.900147
Target:  5'- -gGGGGGCGCGGcccccgcgggagGGGCgGCCGCgggGCg -3'
miRNA:   3'- aaUUCCUGCGCCa-----------UUUGgCGGUGa--UG- -5'
5437 5' -51.7 NC_001798.1 + 2607 0.74 0.695526
Target:  5'- -gGGGGGCGCGGggcGCCGCCcgGCgGCg -3'
miRNA:   3'- aaUUCCUGCGCCauuUGGCGG--UGaUG- -5'
5437 5' -51.7 NC_001798.1 + 5276 0.75 0.653158
Target:  5'- -gGAGGACGCGGagGAggagcgaucgacGCCGCCGCg-- -3'
miRNA:   3'- aaUUCCUGCGCCa-UU------------UGGCGGUGaug -5'
5437 5' -51.7 NC_001798.1 + 9110 0.77 0.526494
Target:  5'- -aAAGGcCGCGGggGAGCCGCCGCg-- -3'
miRNA:   3'- aaUUCCuGCGCCa-UUUGGCGGUGaug -5'
5437 5' -51.7 NC_001798.1 + 9151 0.66 0.985902
Target:  5'- ---cGGGCGCGGc--GCCGcCCGCg-- -3'
miRNA:   3'- aauuCCUGCGCCauuUGGC-GGUGaug -5'
5437 5' -51.7 NC_001798.1 + 9672 0.66 0.984075
Target:  5'- -gGAGGGCGCGGgaugggGGGCUcUCACgUGCg -3'
miRNA:   3'- aaUUCCUGCGCCa-----UUUGGcGGUG-AUG- -5'
5437 5' -51.7 NC_001798.1 + 12365 0.67 0.974936
Target:  5'- ---uGGGCGCGGUGgcuAAUCGUCGggACa -3'
miRNA:   3'- aauuCCUGCGCCAU---UUGGCGGUgaUG- -5'
5437 5' -51.7 NC_001798.1 + 16229 0.67 0.971859
Target:  5'- gUGGGGGgGCGGUGGGgccggggcccuccCCGCCcaccuCUACc -3'
miRNA:   3'- aAUUCCUgCGCCAUUU-------------GGCGGu----GAUG- -5'
5437 5' -51.7 NC_001798.1 + 16432 0.75 0.631825
Target:  5'- uUUGGGGACgGCGGcucGCCGCCGCgACa -3'
miRNA:   3'- -AAUUCCUG-CGCCauuUGGCGGUGaUG- -5'
5437 5' -51.7 NC_001798.1 + 17260 0.66 0.97989
Target:  5'- -cAAGGACGCGGUGugGACgGCgGuCUc- -3'
miRNA:   3'- aaUUCCUGCGCCAU--UUGgCGgU-GAug -5'
5437 5' -51.7 NC_001798.1 + 22770 0.66 0.982074
Target:  5'- -cGAGGACGgGGgacgucuccGGGCCGCgGCggagACg -3'
miRNA:   3'- aaUUCCUGCgCCa--------UUUGGCGgUGa---UG- -5'
5437 5' -51.7 NC_001798.1 + 24202 0.75 0.653158
Target:  5'- ----cGugGCGGccgccguggccaUGAGCCGCCGCUACg -3'
miRNA:   3'- aauucCugCGCC------------AUUUGGCGGUGAUG- -5'
5437 5' -51.7 NC_001798.1 + 24436 0.72 0.823407
Target:  5'- -cGAGcGCGCGGUGc-CCGCCgGCUACg -3'
miRNA:   3'- aaUUCcUGCGCCAUuuGGCGG-UGAUG- -5'
5437 5' -51.7 NC_001798.1 + 24726 0.69 0.914214
Target:  5'- ---cGGGCGCGGccgccCCGCCGC-ACg -3'
miRNA:   3'- aauuCCUGCGCCauuu-GGCGGUGaUG- -5'
5437 5' -51.7 NC_001798.1 + 25545 0.72 0.814432
Target:  5'- -gGAGGACGUgcgcguGGUGAuccucuACuCGCCGCUGCc -3'
miRNA:   3'- aaUUCCUGCG------CCAUU------UG-GCGGUGAUG- -5'
5437 5' -51.7 NC_001798.1 + 26042 0.66 0.984075
Target:  5'- -gGAGGcCGCGcacgcgcgccuGUAccccgacgcGCCGCCGCUGCg -3'
miRNA:   3'- aaUUCCuGCGC-----------CAUu--------UGGCGGUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.