miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5438 3' -59.8 NC_001798.1 + 125233 0.66 0.737086
Target:  5'- gGACGCUGUaGUAGGCGuUGCGU--UGGg -3'
miRNA:   3'- -CUGCGGCA-CGUCCGC-ACGCAcgACUa -5'
5438 3' -59.8 NC_001798.1 + 70323 0.66 0.727369
Target:  5'- cGGC-CCG-GCggAGGCGcggGCGUGCUGGc -3'
miRNA:   3'- -CUGcGGCaCG--UCCGCa--CGCACGACUa -5'
5438 3' -59.8 NC_001798.1 + 111810 0.66 0.727369
Target:  5'- uGCGCCGgucGCGGGCGUccaGgG-GCUGGc -3'
miRNA:   3'- cUGCGGCa--CGUCCGCA---CgCaCGACUa -5'
5438 3' -59.8 NC_001798.1 + 52531 0.66 0.716588
Target:  5'- cGCGCCGUGCuGGCGacggggcucauccUGCagcggcUGCUGGg -3'
miRNA:   3'- cUGCGGCACGuCCGC-------------ACGc-----ACGACUa -5'
5438 3' -59.8 NC_001798.1 + 77787 0.66 0.707703
Target:  5'- uGCGCCGccUGCAGGCGcugGCGgGCa--- -3'
miRNA:   3'- cUGCGGC--ACGUCCGCa--CGCaCGacua -5'
5438 3' -59.8 NC_001798.1 + 52414 0.66 0.707703
Target:  5'- aACGCCGUGCuGGGCGcgGcCGUGUa--- -3'
miRNA:   3'- cUGCGGCACG-UCCGCa-C-GCACGacua -5'
5438 3' -59.8 NC_001798.1 + 2407 0.66 0.707703
Target:  5'- cGGCgGCCGaggGCGccGGCGUGUG-GCUGGg -3'
miRNA:   3'- -CUG-CGGCa--CGU--CCGCACGCaCGACUa -5'
5438 3' -59.8 NC_001798.1 + 114855 0.66 0.697771
Target:  5'- cACGCCGacacgcGCGGGCGgccggucgacgGgGUGCUGGUc -3'
miRNA:   3'- cUGCGGCa-----CGUCCGCa----------CgCACGACUA- -5'
5438 3' -59.8 NC_001798.1 + 22284 0.67 0.677755
Target:  5'- aGAUGCCGcGCGGGCGgagcgGCGgcgGCg--- -3'
miRNA:   3'- -CUGCGGCaCGUCCGCa----CGCa--CGacua -5'
5438 3' -59.8 NC_001798.1 + 77224 0.67 0.657591
Target:  5'- --gGCCGUGCGGGCGcaugGCGccCUGGc -3'
miRNA:   3'- cugCGGCACGUCCGCa---CGCacGACUa -5'
5438 3' -59.8 NC_001798.1 + 9847 0.67 0.627216
Target:  5'- -cCGgCGUGCuGGgGggagGCGUGCUGGa -3'
miRNA:   3'- cuGCgGCACGuCCgCa---CGCACGACUa -5'
5438 3' -59.8 NC_001798.1 + 25745 0.67 0.627216
Target:  5'- cGGCGCUGggcgcGCAgGGCGUGC-UGCUGc- -3'
miRNA:   3'- -CUGCGGCa----CGU-CCGCACGcACGACua -5'
5438 3' -59.8 NC_001798.1 + 5122 0.68 0.606972
Target:  5'- ---cCCGUGCGGuGCGUGCGUGUg--- -3'
miRNA:   3'- cugcGGCACGUC-CGCACGCACGacua -5'
5438 3' -59.8 NC_001798.1 + 148393 0.68 0.596873
Target:  5'- cGugGCgG-GCAGGUGUGCGgGCggGGUg -3'
miRNA:   3'- -CugCGgCaCGUCCGCACGCaCGa-CUA- -5'
5438 3' -59.8 NC_001798.1 + 148286 0.68 0.596873
Target:  5'- cGugGCgG-GCAGGUGUGCGgGCggGGUg -3'
miRNA:   3'- -CugCGgCaCGUCCGCACGCaCGa-CUA- -5'
5438 3' -59.8 NC_001798.1 + 151578 0.68 0.566757
Target:  5'- cGCGUCG-GCGGGCGUGgG-GCUGc- -3'
miRNA:   3'- cUGCGGCaCGUCCGCACgCaCGACua -5'
5438 3' -59.8 NC_001798.1 + 26519 0.7 0.451763
Target:  5'- --gGCCGcgGCGGGCGgcgGCGUGgaGGUg -3'
miRNA:   3'- cugCGGCa-CGUCCGCa--CGCACgaCUA- -5'
5438 3' -59.8 NC_001798.1 + 153817 0.71 0.442738
Target:  5'- aGGCGgCG-GCAGGCGcgGCGUGCgGGg -3'
miRNA:   3'- -CUGCgGCaCGUCCGCa-CGCACGaCUa -5'
5438 3' -59.8 NC_001798.1 + 120490 0.73 0.343057
Target:  5'- cGAUGCCgGUGCcggAGGCGcGCGUGUUGGc -3'
miRNA:   3'- -CUGCGG-CACG---UCCGCaCGCACGACUa -5'
5438 3' -59.8 NC_001798.1 + 26342 0.73 0.306571
Target:  5'- cGACGCCGUGCGcGGCGgcccgGCGgaGCUGc- -3'
miRNA:   3'- -CUGCGGCACGU-CCGCa----CGCa-CGACua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.