miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5439 3' -56.3 NC_001798.1 + 123222 0.66 0.874287
Target:  5'- cUGUCGCG----GGGCGGcuACGGGACc -3'
miRNA:   3'- uACAGUGUcucuUCCGCC--UGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 151168 0.66 0.874287
Target:  5'- -gGcCACGG-GggGGUGGGCGacaGGGCGc -3'
miRNA:   3'- uaCaGUGUCuCuuCCGCCUGC---CCUGC- -5'
5439 3' -56.3 NC_001798.1 + 20934 0.66 0.873561
Target:  5'- cAUGauUCGCAGGcGucguguuGAGGCGGGCGGGucCGg -3'
miRNA:   3'- -UAC--AGUGUCU-C-------UUCCGCCUGCCCu-GC- -5'
5439 3' -56.3 NC_001798.1 + 56171 0.67 0.866939
Target:  5'- -cGcC-CGGGGGAcGGCGGGgGGGugGg -3'
miRNA:   3'- uaCaGuGUCUCUU-CCGCCUgCCCugC- -5'
5439 3' -56.3 NC_001798.1 + 20340 0.67 0.866939
Target:  5'- gGUGgCGCAGGcGGuuggcgcugccGGGCGGGuuCGGGGCGg -3'
miRNA:   3'- -UACaGUGUCU-CU-----------UCCGCCU--GCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 19763 0.67 0.866192
Target:  5'- uGUGUggcCGCAGGGAuaggggcAGGCGG-CGGGGa- -3'
miRNA:   3'- -UACA---GUGUCUCU-------UCCGCCuGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 41116 0.67 0.86394
Target:  5'- --cUCGCAGAGGAGGCGGGugauuuucguguaGGGGu- -3'
miRNA:   3'- uacAGUGUCUCUUCCGCCUg------------CCCUgc -5'
5439 3' -56.3 NC_001798.1 + 30391 0.67 0.85938
Target:  5'- ---aCACGGAGAuguucgAGGCGGGCcugauGGACGc -3'
miRNA:   3'- uacaGUGUCUCU------UCCGCCUGc----CCUGC- -5'
5439 3' -56.3 NC_001798.1 + 124560 0.67 0.85938
Target:  5'- cUGUCGgucgaucuCGGGGAGGGCGGcacCGGGGa- -3'
miRNA:   3'- uACAGU--------GUCUCUUCCGCCu--GCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 31865 0.67 0.854746
Target:  5'- -cGcCGCGGAGggGGCGG-CGGcccgcccccggaagaGGCGc -3'
miRNA:   3'- uaCaGUGUCUCuuCCGCCuGCC---------------CUGC- -5'
5439 3' -56.3 NC_001798.1 + 147612 0.67 0.851616
Target:  5'- -cGgCGgGGAGAGGG-GGGgGGGGCGg -3'
miRNA:   3'- uaCaGUgUCUCUUCCgCCUgCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 102641 0.67 0.851616
Target:  5'- -cGUCGCcGGGc-GGCGGAggggcCGGGGCGc -3'
miRNA:   3'- uaCAGUGuCUCuuCCGCCU-----GCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 151769 0.67 0.851616
Target:  5'- cAUGUCGuuGAGcaucccccAGGCGuGCGGGGCGg -3'
miRNA:   3'- -UACAGUguCUCu-------UCCGCcUGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 26532 0.67 0.843655
Target:  5'- ----gGCGGcguGGAGGUGGugGGGACc -3'
miRNA:   3'- uacagUGUCu--CUUCCGCCugCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 111816 0.67 0.835501
Target:  5'- -gGUCGCGGGcguccaGGGGCuGGcGCGGGGCGg -3'
miRNA:   3'- uaCAGUGUCUc-----UUCCG-CC-UGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 85819 0.67 0.835501
Target:  5'- gAUGaCGgGGGGGggcggGGGCGGGCGGGGg- -3'
miRNA:   3'- -UACaGUgUCUCU-----UCCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 18216 0.67 0.835501
Target:  5'- --cUCGcCGGGGGAcGGUGGGCGGGAa- -3'
miRNA:   3'- uacAGU-GUCUCUU-CCGCCUGCCCUgc -5'
5439 3' -56.3 NC_001798.1 + 76948 0.67 0.835501
Target:  5'- -aGUCACGGcGGcgcugcGGGCGGACcugugGGGGCu -3'
miRNA:   3'- uaCAGUGUCuCU------UCCGCCUG-----CCCUGc -5'
5439 3' -56.3 NC_001798.1 + 102473 0.68 0.827164
Target:  5'- gGUGg-GCgGGAGGAGGCGGguaguGCGgGGACGg -3'
miRNA:   3'- -UACagUG-UCUCUUCCGCC-----UGC-CCUGC- -5'
5439 3' -56.3 NC_001798.1 + 48527 0.68 0.827164
Target:  5'- uUGUgGCgAGGGGcgggagGGGCGGGaGGGGCGg -3'
miRNA:   3'- uACAgUG-UCUCU------UCCGCCUgCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.