miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5440 3' -50.4 NC_001798.1 + 26416 0.66 0.995859
Target:  5'- cCGACGGCgacgcgcccccgCUgGUGCUGCG-CgACGACg -3'
miRNA:   3'- -GCUGUCG------------GAgCACGAUGUaGaUGUUG- -5'
5440 3' -50.4 NC_001798.1 + 128582 0.66 0.993454
Target:  5'- gCGugGGCCgcgCGgacGCggGCGUCaACGACg -3'
miRNA:   3'- -GCugUCGGa--GCa--CGa-UGUAGaUGUUG- -5'
5440 3' -50.4 NC_001798.1 + 100887 0.66 0.993454
Target:  5'- gCGGCcuucuucGCCUUccGCUACGUcCUGCAACu -3'
miRNA:   3'- -GCUGu------CGGAGcaCGAUGUA-GAUGUUG- -5'
5440 3' -50.4 NC_001798.1 + 108820 0.67 0.99004
Target:  5'- cCGuCGGCCUCGacgugGCccguggGCGUCUggACGACg -3'
miRNA:   3'- -GCuGUCGGAGCa----CGa-----UGUAGA--UGUUG- -5'
5440 3' -50.4 NC_001798.1 + 148686 0.68 0.976739
Target:  5'- uGGcCGGCCagaCGUGCUGC-UCUGCAc- -3'
miRNA:   3'- gCU-GUCGGa--GCACGAUGuAGAUGUug -5'
5440 3' -50.4 NC_001798.1 + 63179 0.68 0.974094
Target:  5'- aCGACGGCCcCG-GCgUACGaggugCUGCGGCa -3'
miRNA:   3'- -GCUGUCGGaGCaCG-AUGUa----GAUGUUG- -5'
5440 3' -50.4 NC_001798.1 + 89148 0.69 0.971238
Target:  5'- gCGACGGCCUCGgGCcGCAgggAgAGCg -3'
miRNA:   3'- -GCUGUCGGAGCaCGaUGUagaUgUUG- -5'
5440 3' -50.4 NC_001798.1 + 49683 0.69 0.971238
Target:  5'- uCGACGGCCUC-UGCUGCGacCUGgAGa -3'
miRNA:   3'- -GCUGUCGGAGcACGAUGUa-GAUgUUg -5'
5440 3' -50.4 NC_001798.1 + 4754 0.69 0.968161
Target:  5'- gGGCcGCCUCGUcgGCaucgGCAUCgGCGGCg -3'
miRNA:   3'- gCUGuCGGAGCA--CGa---UGUAGaUGUUG- -5'
5440 3' -50.4 NC_001798.1 + 69004 0.7 0.953527
Target:  5'- uCGGCGGCgUCGcGC-GCAUCguagGCGGCg -3'
miRNA:   3'- -GCUGUCGgAGCaCGaUGUAGa---UGUUG- -5'
5440 3' -50.4 NC_001798.1 + 89749 0.7 0.944737
Target:  5'- aGACGGCCUCG-GCgacgGCGUU--CAGCu -3'
miRNA:   3'- gCUGUCGGAGCaCGa---UGUAGauGUUG- -5'
5440 3' -50.4 NC_001798.1 + 41344 0.7 0.93996
Target:  5'- -uACGGCCUCGUGC-ACGUUcAUGACc -3'
miRNA:   3'- gcUGUCGGAGCACGaUGUAGaUGUUG- -5'
5440 3' -50.4 NC_001798.1 + 52519 0.71 0.924072
Target:  5'- gCGGCGGCCgcgcgcgcCGUGCUGgcgacggggcuCAUcCUGCAGCg -3'
miRNA:   3'- -GCUGUCGGa-------GCACGAU-----------GUA-GAUGUUG- -5'
5440 3' -50.4 NC_001798.1 + 97702 0.71 0.918255
Target:  5'- uGGcCAGCCUCGggcGCUGCGUgCgcgaGCAGCg -3'
miRNA:   3'- gCU-GUCGGAGCa--CGAUGUA-Ga---UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.