miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5441 3' -51.6 NC_001798.1 + 13890 0.66 0.991267
Target:  5'- uCGGAGUaUGgu--GGUGcgGugGGUCCg -3'
miRNA:   3'- uGUCUCG-ACauauCCACa-CugCCAGG- -5'
5441 3' -51.6 NC_001798.1 + 110368 0.66 0.988631
Target:  5'- aACAGcAGCUGgcccagGGGccgGUGGCGGgcaccCCg -3'
miRNA:   3'- -UGUC-UCGACaua---UCCa--CACUGCCa----GG- -5'
5441 3' -51.6 NC_001798.1 + 57513 0.66 0.988484
Target:  5'- uGCGGGGUUGggggggcGUGGGUGUGGuuCGGggggcggaugcguUCCg -3'
miRNA:   3'- -UGUCUCGACa------UAUCCACACU--GCC-------------AGG- -5'
5441 3' -51.6 NC_001798.1 + 52182 0.66 0.987099
Target:  5'- uGCGGGGCgcguccUGGacGUGcUGGCGGUCCu -3'
miRNA:   3'- -UGUCUCGacau--AUC--CAC-ACUGCCAGG- -5'
5441 3' -51.6 NC_001798.1 + 60303 0.67 0.981545
Target:  5'- gGCcGAGCUcgaacgugGUGGGUuUGGCGGUCUc -3'
miRNA:   3'- -UGuCUCGAca------UAUCCAcACUGCCAGG- -5'
5441 3' -51.6 NC_001798.1 + 14937 0.67 0.979344
Target:  5'- aACAGGGggaUGUGUugGGGUGUGG-GGcCCg -3'
miRNA:   3'- -UGUCUCg--ACAUA--UCCACACUgCCaGG- -5'
5441 3' -51.6 NC_001798.1 + 36286 0.67 0.974367
Target:  5'- gGCGGGGggGggugccGUGGGUGUGGCGG-Cg -3'
miRNA:   3'- -UGUCUCgaCa-----UAUCCACACUGCCaGg -5'
5441 3' -51.6 NC_001798.1 + 134240 0.68 0.965346
Target:  5'- gGCGGGcGCUGUAUGcGUGcguucUGGCGGcCCu -3'
miRNA:   3'- -UGUCU-CGACAUAUcCAC-----ACUGCCaGG- -5'
5441 3' -51.6 NC_001798.1 + 12938 0.69 0.95014
Target:  5'- ---aAGCUGUAUAGG-GcGACGGUgCg -3'
miRNA:   3'- ugucUCGACAUAUCCaCaCUGCCAgG- -5'
5441 3' -51.6 NC_001798.1 + 104436 0.72 0.841673
Target:  5'- cCAGGGCcGUAauGGUGuUGGCGGUCg -3'
miRNA:   3'- uGUCUCGaCAUauCCAC-ACUGCCAGg -5'
5441 3' -51.6 NC_001798.1 + 43672 0.74 0.74949
Target:  5'- cGCGGGGCUGgggucGUGGGUGgucACGGcCCg -3'
miRNA:   3'- -UGUCUCGACa----UAUCCACac-UGCCaGG- -5'
5441 3' -51.6 NC_001798.1 + 4848 0.74 0.729431
Target:  5'- gGCGGGGCgacgguccggGUucgGGGUGggcGGCGGUCCg -3'
miRNA:   3'- -UGUCUCGa---------CAua-UCCACa--CUGCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.