miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5441 5' -59 NC_001798.1 + 23819 0.66 0.792143
Target:  5'- -cGGCCCcCCGCCCCcggggcgcgUGcUGUACGGc- -3'
miRNA:   3'- guUCGGGcGGCGGGG---------AC-ACAUGUCac -5'
5441 5' -59 NC_001798.1 + 87531 0.66 0.792143
Target:  5'- -cGGUUCGCCGCCCacgUGUG-GCAGa- -3'
miRNA:   3'- guUCGGGCGGCGGGg--ACACaUGUCac -5'
5441 5' -59 NC_001798.1 + 146762 0.66 0.773951
Target:  5'- aGAGCCCGa-GCCCCgcccgcGUGuUGCuGUGg -3'
miRNA:   3'- gUUCGGGCggCGGGGa-----CAC-AUGuCAC- -5'
5441 5' -59 NC_001798.1 + 77278 0.66 0.745759
Target:  5'- --cGCCCGCgacccggccuCGCCCCUGUccuuccucGCGGUGc -3'
miRNA:   3'- guuCGGGCG----------GCGGGGACAca------UGUCAC- -5'
5441 5' -59 NC_001798.1 + 91628 0.67 0.726466
Target:  5'- -cGGCCgGCCGCCCggGUGaGC-GUGa -3'
miRNA:   3'- guUCGGgCGGCGGGgaCACaUGuCAC- -5'
5441 5' -59 NC_001798.1 + 16202 0.67 0.726466
Target:  5'- aCGGGCCgcccucCGCacgCGCCgCCUGUGgggggGCGGUGg -3'
miRNA:   3'- -GUUCGG------GCG---GCGG-GGACACa----UGUCAC- -5'
5441 5' -59 NC_001798.1 + 75193 0.67 0.706855
Target:  5'- gGGGCCCGCCGCCCCc-----CGGa- -3'
miRNA:   3'- gUUCGGGCGGCGGGGacacauGUCac -5'
5441 5' -59 NC_001798.1 + 58326 0.67 0.696954
Target:  5'- uCAGGCCCGCCGCCgC-GUGgcccccgACAa-- -3'
miRNA:   3'- -GUUCGGGCGGCGGgGaCACa------UGUcac -5'
5441 5' -59 NC_001798.1 + 54487 0.67 0.686999
Target:  5'- ---cCCCGCgGCCCCUcGgagGUGCAGg- -3'
miRNA:   3'- guucGGGCGgCGGGGA-Ca--CAUGUCac -5'
5441 5' -59 NC_001798.1 + 82328 0.67 0.686999
Target:  5'- --uGCCCGCCGCCCCccacccCAGUc -3'
miRNA:   3'- guuCGGGCGGCGGGGacacauGUCAc -5'
5441 5' -59 NC_001798.1 + 3545 0.68 0.666966
Target:  5'- -cGGCCCGCCGCCaugGcGUACcccaGGUGg -3'
miRNA:   3'- guUCGGGCGGCGGggaCaCAUG----UCAC- -5'
5441 5' -59 NC_001798.1 + 82269 0.68 0.664955
Target:  5'- cCAGGCCCgGuuGCCCCgagcgagccuuUGUGCGGUu -3'
miRNA:   3'- -GUUCGGG-CggCGGGGac---------ACAUGUCAc -5'
5441 5' -59 NC_001798.1 + 100241 0.68 0.656904
Target:  5'- --uGCCCGUCGCCCCggacaacGUgaucGUGCAGa- -3'
miRNA:   3'- guuCGGGCGGCGGGGa------CA----CAUGUCac -5'
5441 5' -59 NC_001798.1 + 89453 0.68 0.626633
Target:  5'- gAGGCCCcgaaaCCGCCCCUggGUGUccgGCAGg- -3'
miRNA:   3'- gUUCGGGc----GGCGGGGA--CACA---UGUCac -5'
5441 5' -59 NC_001798.1 + 25691 0.69 0.616541
Target:  5'- gCGGGCCCGCCacgGCCgCCUGg--GCGGg- -3'
miRNA:   3'- -GUUCGGGCGG---CGG-GGACacaUGUCac -5'
5441 5' -59 NC_001798.1 + 81018 0.69 0.606461
Target:  5'- gGAGCCCcccgGCC-CCCCUGacGUGCGGUu -3'
miRNA:   3'- gUUCGGG----CGGcGGGGACa-CAUGUCAc -5'
5441 5' -59 NC_001798.1 + 31669 0.69 0.596398
Target:  5'- cCGGGCCCgcGCCGCCCgCcGUGc-CGGUGg -3'
miRNA:   3'- -GUUCGGG--CGGCGGG-GaCACauGUCAC- -5'
5441 5' -59 NC_001798.1 + 94960 0.69 0.576358
Target:  5'- cCGGGuCCCGCCGUCCCcccaGcGUGCAGg- -3'
miRNA:   3'- -GUUC-GGGCGGCGGGGa---CaCAUGUCac -5'
5441 5' -59 NC_001798.1 + 75988 0.7 0.527036
Target:  5'- --uGCCCGCCGCCCCgGgcgccGgcgGCAGg- -3'
miRNA:   3'- guuCGGGCGGCGGGGaCa----Ca--UGUCac -5'
5441 5' -59 NC_001798.1 + 74335 0.7 0.527036
Target:  5'- --cGCCCacgaCCGCCCCaagGUGCGGUGg -3'
miRNA:   3'- guuCGGGc---GGCGGGGacaCAUGUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.