miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5442 3' -55.5 NC_001798.1 + 15154 0.66 0.934042
Target:  5'- gGCGCCCucaaacuccucGGGUCCgccgcgauguucgggGGGUgggggggCUGGCgAGCc -3'
miRNA:   3'- -CGCGGG-----------UCCAGG---------------UCUAa------GACUGgUCG- -5'
5442 3' -55.5 NC_001798.1 + 66806 0.66 0.932024
Target:  5'- cGCGCgCGGGUCCG---UCgcgGAgcCCGGCc -3'
miRNA:   3'- -CGCGgGUCCAGGUcuaAGa--CU--GGUCG- -5'
5442 3' -55.5 NC_001798.1 + 84930 0.66 0.932024
Target:  5'- cGCGUCUAGacuuUCCAGggUCUggGACCgcAGCg -3'
miRNA:   3'- -CGCGGGUCc---AGGUCuaAGA--CUGG--UCG- -5'
5442 3' -55.5 NC_001798.1 + 113005 0.66 0.926814
Target:  5'- -aGCUUGGGUCCGGAcccgGGCCcGCg -3'
miRNA:   3'- cgCGGGUCCAGGUCUaagaCUGGuCG- -5'
5442 3' -55.5 NC_001798.1 + 12685 0.66 0.926814
Target:  5'- cGCGCCgaugauCAGGcCCGGGUUgCUGGgggCGGCg -3'
miRNA:   3'- -CGCGG------GUCCaGGUCUAA-GACUg--GUCG- -5'
5442 3' -55.5 NC_001798.1 + 111810 0.66 0.926814
Target:  5'- uGCGCCggucgCGGGcgUCCAGGggCUGGCgCGGg -3'
miRNA:   3'- -CGCGG-----GUCC--AGGUCUaaGACUG-GUCg -5'
5442 3' -55.5 NC_001798.1 + 137370 0.66 0.925743
Target:  5'- -aGCCCuGGUCCGGcgcaccccucggcGUUCUcccgggcGACCGGg -3'
miRNA:   3'- cgCGGGuCCAGGUC-------------UAAGA-------CUGGUCg -5'
5442 3' -55.5 NC_001798.1 + 122027 0.66 0.921364
Target:  5'- gGCGCCCuGGUCCAc---CaGGCCgucAGCg -3'
miRNA:   3'- -CGCGGGuCCAGGUcuaaGaCUGG---UCG- -5'
5442 3' -55.5 NC_001798.1 + 111020 0.66 0.921364
Target:  5'- cGCGgCCAGGcgUCCG-----UGGCCGGCg -3'
miRNA:   3'- -CGCgGGUCC--AGGUcuaagACUGGUCG- -5'
5442 3' -55.5 NC_001798.1 + 143790 0.66 0.917979
Target:  5'- gGCGCCCcagagcauaaagaccAGGcCCGGGcggCgcgcGGCCAGCc -3'
miRNA:   3'- -CGCGGG---------------UCCaGGUCUaa-Ga---CUGGUCG- -5'
5442 3' -55.5 NC_001798.1 + 1416 0.66 0.915674
Target:  5'- cGCGCCCAGGccCCAGcgcgCgcaGGCgCGGUg -3'
miRNA:   3'- -CGCGGGUCCa-GGUCuaa-Ga--CUG-GUCG- -5'
5442 3' -55.5 NC_001798.1 + 58435 0.66 0.915674
Target:  5'- cGCGCCCgcaaAGGUcaccacgggaacCCAGAUguuuUCgGGCCGuGCg -3'
miRNA:   3'- -CGCGGG----UCCA------------GGUCUA----AGaCUGGU-CG- -5'
5442 3' -55.5 NC_001798.1 + 136648 0.66 0.912146
Target:  5'- gGCGCaaaaCAGGgCCgagaggacggggggcGGAUUgUUGGCCAGCa -3'
miRNA:   3'- -CGCGg---GUCCaGG---------------UCUAA-GACUGGUCG- -5'
5442 3' -55.5 NC_001798.1 + 57024 0.66 0.909746
Target:  5'- cGCGCacCCAGGUCCcGuacgCgGACgGGCg -3'
miRNA:   3'- -CGCG--GGUCCAGGuCuaa-GaCUGgUCG- -5'
5442 3' -55.5 NC_001798.1 + 19981 0.66 0.909746
Target:  5'- -aGCCCcgccGGacgcggauUCCGGGUUCUcccGGCCGGCc -3'
miRNA:   3'- cgCGGGu---CC--------AGGUCUAAGA---CUGGUCG- -5'
5442 3' -55.5 NC_001798.1 + 78707 0.67 0.903582
Target:  5'- cCGaCCAGGUCgAGGUUCUguugGAUCAGa -3'
miRNA:   3'- cGCgGGUCCAGgUCUAAGA----CUGGUCg -5'
5442 3' -55.5 NC_001798.1 + 133253 0.67 0.897183
Target:  5'- uCGCCCccGUCUGGGagcuguuccgUCUGugCAGCa -3'
miRNA:   3'- cGCGGGucCAGGUCUa---------AGACugGUCG- -5'
5442 3' -55.5 NC_001798.1 + 3398 0.67 0.890553
Target:  5'- cGCGCCCcGGUcagcgCCGcGUUCUcgcgcGCCAGCa -3'
miRNA:   3'- -CGCGGGuCCA-----GGUcUAAGAc----UGGUCG- -5'
5442 3' -55.5 NC_001798.1 + 42929 0.67 0.890553
Target:  5'- aUGUCCAGaUCCAGGaugaugUUCguaacGGCCAGCg -3'
miRNA:   3'- cGCGGGUCcAGGUCU------AAGa----CUGGUCG- -5'
5442 3' -55.5 NC_001798.1 + 40179 0.67 0.890553
Target:  5'- aGUGgCCGGGUCC-GAaUCgagGAgCGGCa -3'
miRNA:   3'- -CGCgGGUCCAGGuCUaAGa--CUgGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.