miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5443 3' -60.9 NC_001798.1 + 119229 0.66 0.755927
Target:  5'- cCCCGGcuGcucGCGCUGAGCGcCCAggACGGa -3'
miRNA:   3'- -GGGCCucC---UGCGGCUCGCcGGU--UGUC- -5'
5443 3' -60.9 NC_001798.1 + 31342 0.66 0.755927
Target:  5'- -gCGGGGGGCGCgCGca-GGCgCGGCGGg -3'
miRNA:   3'- ggGCCUCCUGCG-GCucgCCG-GUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 83574 0.66 0.755927
Target:  5'- gCUGGGGcGGugaaacUGCgGGGCGGCCAuCGGg -3'
miRNA:   3'- gGGCCUC-CU------GCGgCUCGCCGGUuGUC- -5'
5443 3' -60.9 NC_001798.1 + 117784 0.66 0.755927
Target:  5'- aCCCGu-GGGCGUCGcAGCGGUUcucguACGGg -3'
miRNA:   3'- -GGGCcuCCUGCGGC-UCGCCGGu----UGUC- -5'
5443 3' -60.9 NC_001798.1 + 22514 0.66 0.755927
Target:  5'- -aCGGAGcGCGgcuaCCGAcGCGGCCGcCAGg -3'
miRNA:   3'- ggGCCUCcUGC----GGCU-CGCCGGUuGUC- -5'
5443 3' -60.9 NC_001798.1 + 23830 0.66 0.755927
Target:  5'- cCCCGGGGcGCGUgcuguacggCGGGCuGGgCGACAGc -3'
miRNA:   3'- -GGGCCUCcUGCG---------GCUCG-CCgGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 35387 0.66 0.755927
Target:  5'- -aUGGaAGGGCGUgGGGcCGGCCGcCGGa -3'
miRNA:   3'- ggGCC-UCCUGCGgCUC-GCCGGUuGUC- -5'
5443 3' -60.9 NC_001798.1 + 40153 0.66 0.755927
Target:  5'- cUCCGaGGGGGCGCgugucggaagaGAGUGGCCGGg-- -3'
miRNA:   3'- -GGGC-CUCCUGCGg----------CUCGCCGGUUguc -5'
5443 3' -60.9 NC_001798.1 + 40822 0.66 0.75501
Target:  5'- cCCUGGGGGcCGCUGguuccgcguuuuuGGgGGCCGagccccgccGCAGg -3'
miRNA:   3'- -GGGCCUCCuGCGGC-------------UCgCCGGU---------UGUC- -5'
5443 3' -60.9 NC_001798.1 + 45469 0.66 0.753175
Target:  5'- cCCCGGAGGuuGCGUCGGucccagucacccacGCcGG-CGACAGa -3'
miRNA:   3'- -GGGCCUCC--UGCGGCU--------------CG-CCgGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 48334 0.66 0.752255
Target:  5'- aCgCGGcgcAGGACGUCGAcgcgaccGCGGCCGcccggggccgccccGCGGg -3'
miRNA:   3'- -GgGCC---UCCUGCGGCU-------CGCCGGU--------------UGUC- -5'
5443 3' -60.9 NC_001798.1 + 135540 0.66 0.74672
Target:  5'- gCCCucGAGGcguccgugcGCGCCGuacuuuCGGCCAACGGc -3'
miRNA:   3'- -GGGc-CUCC---------UGCGGCuc----GCCGGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 121791 0.66 0.74672
Target:  5'- uCUCGGGcGGG-GCCGGGCcGGCCGuuguCGGc -3'
miRNA:   3'- -GGGCCU-CCUgCGGCUCG-CCGGUu---GUC- -5'
5443 3' -60.9 NC_001798.1 + 22297 0.66 0.74672
Target:  5'- -gCGGAGcGGCGgCGGcGCGaCCAACGGg -3'
miRNA:   3'- ggGCCUC-CUGCgGCU-CGCcGGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 102638 0.66 0.74672
Target:  5'- uCCCGu----CGCCGGGCGGCgGAgGGg -3'
miRNA:   3'- -GGGCcuccuGCGGCUCGCCGgUUgUC- -5'
5443 3' -60.9 NC_001798.1 + 2421 0.66 0.74672
Target:  5'- gCCGGcGuGugGCUGggccccGGCGGCUGGCGGc -3'
miRNA:   3'- gGGCCuC-CugCGGC------UCGCCGGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 25319 0.66 0.74672
Target:  5'- cCCUGGAGGccuacuGCGCCccGCGGgCCGugGc -3'
miRNA:   3'- -GGGCCUCC------UGCGGcuCGCC-GGUugUc -5'
5443 3' -60.9 NC_001798.1 + 102191 0.66 0.745794
Target:  5'- gCCCGGAagccuggcgcgcGGcGCGCCGGgagucgaccgggcGCGGCUcggGGCGGg -3'
miRNA:   3'- -GGGCCU------------CC-UGCGGCU-------------CGCCGG---UUGUC- -5'
5443 3' -60.9 NC_001798.1 + 80915 0.66 0.745794
Target:  5'- gCCUGucGGcgcucauCGCCGAGCGcccucucGCCGACGGg -3'
miRNA:   3'- -GGGCcuCCu------GCGGCUCGC-------CGGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 91075 0.66 0.737421
Target:  5'- aCCUuaGGGGcGCGCCGgaGGCGGCCGuCGu -3'
miRNA:   3'- -GGG--CCUCcUGCGGC--UCGCCGGUuGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.