miRNA display CGI


Results 21 - 40 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5443 3' -60.9 NC_001798.1 + 119883 0.66 0.737421
Target:  5'- gCCgGGGGGAUcCCGGucGgGGCCGcCAGg -3'
miRNA:   3'- -GGgCCUCCUGcGGCU--CgCCGGUuGUC- -5'
5443 3' -60.9 NC_001798.1 + 39507 0.66 0.737421
Target:  5'- cCCCGGA-GACGUCGAGCuGCUc---- -3'
miRNA:   3'- -GGGCCUcCUGCGGCUCGcCGGuuguc -5'
5443 3' -60.9 NC_001798.1 + 55754 0.66 0.737421
Target:  5'- -aCGGGGGAUaa-GGGUGGCCGGCGc -3'
miRNA:   3'- ggGCCUCCUGcggCUCGCCGGUUGUc -5'
5443 3' -60.9 NC_001798.1 + 88021 0.66 0.737421
Target:  5'- uCCCGG-GGGCGCUuggccggggaGGGCagGGCCGcuggggggGCGGg -3'
miRNA:   3'- -GGGCCuCCUGCGG----------CUCG--CCGGU--------UGUC- -5'
5443 3' -60.9 NC_001798.1 + 91075 0.66 0.737421
Target:  5'- aCCUuaGGGGcGCGCCGgaGGCGGCCGuCGu -3'
miRNA:   3'- -GGG--CCUCcUGCGGC--UCGCCGGUuGUc -5'
5443 3' -60.9 NC_001798.1 + 146477 0.66 0.737421
Target:  5'- gCCgCGGGcuccGGG-GCCGGGCcgGGCCGGCAa -3'
miRNA:   3'- -GG-GCCU----CCUgCGGCUCG--CCGGUUGUc -5'
5443 3' -60.9 NC_001798.1 + 14993 0.66 0.731801
Target:  5'- gCgGGGGGGCGaggcguguugggggCGAGCGGCCcaagaauuccuGGCGGg -3'
miRNA:   3'- gGgCCUCCUGCg-------------GCUCGCCGG-----------UUGUC- -5'
5443 3' -60.9 NC_001798.1 + 25236 0.66 0.728038
Target:  5'- gCCCGccGAGGGCcCCGAcccgcaggGCGGCUGGCGc -3'
miRNA:   3'- -GGGC--CUCCUGcGGCU--------CGCCGGUUGUc -5'
5443 3' -60.9 NC_001798.1 + 19056 0.66 0.728038
Target:  5'- aCCUGuGGGugGUCgGGGCGGCgGACc- -3'
miRNA:   3'- -GGGCcUCCugCGG-CUCGCCGgUUGuc -5'
5443 3' -60.9 NC_001798.1 + 24153 0.66 0.728038
Target:  5'- aCCUGGGGuACGCCauGGCGGCgGGCc- -3'
miRNA:   3'- -GGGCCUCcUGCGGc-UCGCCGgUUGuc -5'
5443 3' -60.9 NC_001798.1 + 74763 0.66 0.728038
Target:  5'- cCUCGGccccGGACGCC--GCGGCCu-CGGg -3'
miRNA:   3'- -GGGCCu---CCUGCGGcuCGCCGGuuGUC- -5'
5443 3' -60.9 NC_001798.1 + 120177 0.66 0.728038
Target:  5'- aCCGc--GcCGCCGGGCGGCUcGCAGu -3'
miRNA:   3'- gGGCcucCuGCGGCUCGCCGGuUGUC- -5'
5443 3' -60.9 NC_001798.1 + 133015 0.66 0.728038
Target:  5'- cUCCGGccGGACGUCGcGCcGGCCGAgGu -3'
miRNA:   3'- -GGGCCu-CCUGCGGCuCG-CCGGUUgUc -5'
5443 3' -60.9 NC_001798.1 + 2827 0.66 0.728038
Target:  5'- cCCCGGcgaccAGGcucacggcGCGCaCG-GCGGCCAcgGCGGc -3'
miRNA:   3'- -GGGCC-----UCC--------UGCG-GCuCGCCGGU--UGUC- -5'
5443 3' -60.9 NC_001798.1 + 108650 0.66 0.728038
Target:  5'- aCCGaGAGGcAC-CCGGaCGGCCGACGc -3'
miRNA:   3'- gGGC-CUCC-UGcGGCUcGCCGGUUGUc -5'
5443 3' -60.9 NC_001798.1 + 16832 0.66 0.727095
Target:  5'- aCCUgGGAGcgauggcgugcauGACGCCGGGCGGCa---AGg -3'
miRNA:   3'- -GGG-CCUC-------------CUGCGGCUCGCCGguugUC- -5'
5443 3' -60.9 NC_001798.1 + 97444 0.66 0.722371
Target:  5'- --aGGAGGcgcuGCGCCGcgugcuggcgcggcuGGgGGCCGGCGGc -3'
miRNA:   3'- gggCCUCC----UGCGGC---------------UCgCCGGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 23237 0.66 0.718579
Target:  5'- aCCGGAGacGACGUCc-GCGGUCcGCGGg -3'
miRNA:   3'- gGGCCUC--CUGCGGcuCGCCGGuUGUC- -5'
5443 3' -60.9 NC_001798.1 + 99572 0.66 0.718579
Target:  5'- gCCUGGGacuGGGUGCCGaAGCGaCCGGCGGu -3'
miRNA:   3'- -GGGCCU---CCUGCGGC-UCGCcGGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 30270 0.66 0.718579
Target:  5'- gCCUGGGGGAUGCUcaacgacauGcAGUGGCucgcCAGCAGc -3'
miRNA:   3'- -GGGCCUCCUGCGG---------C-UCGCCG----GUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.