miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5443 3' -60.9 NC_001798.1 + 56 0.69 0.525125
Target:  5'- --gGGGGGGCGCgaaggCGGGCGGCggCGGCGGg -3'
miRNA:   3'- gggCCUCCUGCG-----GCUCGCCG--GUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 2093 0.7 0.487134
Target:  5'- cUCCGGGGGGgGCCcgcccccGGcGCGGCCcGCGGc -3'
miRNA:   3'- -GGGCCUCCUgCGG-------CU-CGCCGGuUGUC- -5'
5443 3' -60.9 NC_001798.1 + 2190 0.73 0.361097
Target:  5'- aCCUGGcgcauccAGGcCGCCGcGCGGCgCAGCGGg -3'
miRNA:   3'- -GGGCC-------UCCuGCGGCuCGCCG-GUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 2264 0.72 0.40137
Target:  5'- gCCGGGGGGCGgggCGGcgcagcgcGCGGCCAGCGa -3'
miRNA:   3'- gGGCCUCCUGCg--GCU--------CGCCGGUUGUc -5'
5443 3' -60.9 NC_001798.1 + 2379 0.67 0.650918
Target:  5'- gCCCGcGGGGCGCaguaGgccuccagggcGGCGGCCGAgGGc -3'
miRNA:   3'- -GGGCcUCCUGCGg---C-----------UCGCCGGUUgUC- -5'
5443 3' -60.9 NC_001798.1 + 2421 0.66 0.74672
Target:  5'- gCCGGcGuGugGCUGggccccGGCGGCUGGCGGc -3'
miRNA:   3'- gGGCCuC-CugCGGC------UCGCCGGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 2488 0.69 0.525125
Target:  5'- gCCGGcGGGucaGCGCCGcggggcgcGGCGGCCGcgGCGGc -3'
miRNA:   3'- gGGCC-UCC---UGCGGC--------UCGCCGGU--UGUC- -5'
5443 3' -60.9 NC_001798.1 + 2541 0.71 0.451367
Target:  5'- -gCGGGGGGCGCgGcccccgcgggaggGGCGGCCGcgggGCGGg -3'
miRNA:   3'- ggGCCUCCUGCGgC-------------UCGCCGGU----UGUC- -5'
5443 3' -60.9 NC_001798.1 + 2604 0.73 0.332253
Target:  5'- uUCGGGGGGCGCgGGGCGccgcCCGGCGGc -3'
miRNA:   3'- gGGCCUCCUGCGgCUCGCc---GGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 2827 0.66 0.728038
Target:  5'- cCCCGGcgaccAGGcucacggcGCGCaCG-GCGGCCAcgGCGGc -3'
miRNA:   3'- -GGGCC-----UCC--------UGCG-GCuCGCCGGU--UGUC- -5'
5443 3' -60.9 NC_001798.1 + 3004 0.69 0.552662
Target:  5'- cCCCGGgcgcgGGGGCgcggcggGCCGGGCuccGGCCAGCc- -3'
miRNA:   3'- -GGGCC-----UCCUG-------CGGCUCG---CCGGUUGuc -5'
5443 3' -60.9 NC_001798.1 + 3402 0.7 0.469971
Target:  5'- cCCCGGucaGCGCCGcguucucGCGcGCCAGCAGg -3'
miRNA:   3'- -GGGCCuccUGCGGCu------CGC-CGGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 3964 0.67 0.650918
Target:  5'- gCCGGAGGccGCGUCG-GCGuCCAGCu- -3'
miRNA:   3'- gGGCCUCC--UGCGGCuCGCcGGUUGuc -5'
5443 3' -60.9 NC_001798.1 + 4054 0.69 0.525125
Target:  5'- gCCCGGcGG-CGCUccaGGCGGCCcGCGGu -3'
miRNA:   3'- -GGGCCuCCuGCGGc--UCGCCGGuUGUC- -5'
5443 3' -60.9 NC_001798.1 + 4125 0.66 0.699467
Target:  5'- gCUCGGccGGGGCGCCGcccccGgGGCCcucGCGGg -3'
miRNA:   3'- -GGGCC--UCCUGCGGCu----CgCCGGu--UGUC- -5'
5443 3' -60.9 NC_001798.1 + 4328 0.68 0.620585
Target:  5'- aUCCGGAuuuugaugagucaGaGGCgGCCGAGCG-CCGGCGGg -3'
miRNA:   3'- -GGGCCU-------------C-CUG-CGGCUCGCcGGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 4406 0.71 0.452244
Target:  5'- gUCGGcGGGGCGCCGGgggucGCGG-CGACAGg -3'
miRNA:   3'- gGGCC-UCCUGCGGCU-----CGCCgGUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 6041 0.66 0.737421
Target:  5'- gCCacaGcGAGacagaGACGCCG-GCGGCgAGCGGg -3'
miRNA:   3'- -GGg--C-CUC-----CUGCGGCuCGCCGgUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 6224 0.77 0.18751
Target:  5'- aCCCGGGGGGCcgGCCGGGgGGaCgGGCGGg -3'
miRNA:   3'- -GGGCCUCCUG--CGGCUCgCC-GgUUGUC- -5'
5443 3' -60.9 NC_001798.1 + 6269 0.68 0.592274
Target:  5'- gCCgGGGGGACggGCCGGGgggacgGGCCGGgGGg -3'
miRNA:   3'- -GGgCCUCCUG--CGGCUCg-----CCGGUUgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.