miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5443 5' -54.9 NC_001798.1 + 145893 0.66 0.957963
Target:  5'- cCCCg---ACCGcCGccGCGCcCCACCGGc -3'
miRNA:   3'- -GGGacaaUGGCaGC--UGCGuGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 20654 0.66 0.957963
Target:  5'- aCCaaccaGCCGUCuGACGCAUCAUCAu -3'
miRNA:   3'- -GGgacaaUGGCAG-CUGCGUGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 97902 0.66 0.957963
Target:  5'- aCCgGUUcaugcgAgCGUCGcuGCuGCGCCACCAGg -3'
miRNA:   3'- gGGaCAA------UgGCAGC--UG-CGUGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 77297 0.66 0.957963
Target:  5'- cCCCUGUccuuccucgcggUGCUGgcCGAUaGCGCCGCgGGg -3'
miRNA:   3'- -GGGACA------------AUGGCa-GCUG-CGUGGUGgUC- -5'
5443 5' -54.9 NC_001798.1 + 22976 0.66 0.957963
Target:  5'- gUCCgggGagGCCGUCGACGaGCCuGCCGc -3'
miRNA:   3'- -GGGa--CaaUGGCAGCUGCgUGG-UGGUc -5'
5443 5' -54.9 NC_001798.1 + 112998 0.66 0.957222
Target:  5'- uCCCUGaagcuuggguCCGgaccCGGgccCGCGCCGCCAGc -3'
miRNA:   3'- -GGGACaau-------GGCa---GCU---GCGUGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 49233 0.66 0.954172
Target:  5'- ---aGUUuCUGUCGACGCugC-CCAGc -3'
miRNA:   3'- gggaCAAuGGCAGCUGCGugGuGGUC- -5'
5443 5' -54.9 NC_001798.1 + 153068 0.66 0.954172
Target:  5'- cCCCUGggGCgGgcggagcggCGGgGCGgCGCCGGg -3'
miRNA:   3'- -GGGACaaUGgCa--------GCUgCGUgGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 121528 0.66 0.954172
Target:  5'- aCCCg--UACaCGgucgCGGCGCugCGCCuGg -3'
miRNA:   3'- -GGGacaAUG-GCa---GCUGCGugGUGGuC- -5'
5443 5' -54.9 NC_001798.1 + 128020 0.66 0.954172
Target:  5'- cCCCUcucGCCGgggGGCGCACaCGCCAu -3'
miRNA:   3'- -GGGAcaaUGGCag-CUGCGUG-GUGGUc -5'
5443 5' -54.9 NC_001798.1 + 61841 0.66 0.954172
Target:  5'- cCCCggGggACCGggGaACGCggGCCGCCGGc -3'
miRNA:   3'- -GGGa-CaaUGGCagC-UGCG--UGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 3285 0.66 0.950157
Target:  5'- gCUCgucgGCCGgCGACGcCGCCGCCGa -3'
miRNA:   3'- -GGGacaaUGGCaGCUGC-GUGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 5388 0.66 0.950157
Target:  5'- uCCgUGgcggcggcCCGUUGGuCGCGCCGCCGc -3'
miRNA:   3'- -GGgACaau-----GGCAGCU-GCGUGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 108660 0.66 0.950157
Target:  5'- aCCCggacgGCCGaCGcaACGCGCCGCCc- -3'
miRNA:   3'- -GGGacaa-UGGCaGC--UGCGUGGUGGuc -5'
5443 5' -54.9 NC_001798.1 + 129544 0.66 0.950157
Target:  5'- gCCCUGcUGCUGcCGACacaacgucauCACCACCGa -3'
miRNA:   3'- -GGGACaAUGGCaGCUGc---------GUGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 143809 0.66 0.950157
Target:  5'- aCCaGgc-CCGggCGGCGCGCgGCCAGc -3'
miRNA:   3'- gGGaCaauGGCa-GCUGCGUGgUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 25179 0.66 0.945915
Target:  5'- cCCCgcc--CCGcCGACGCcGCCGCCGc -3'
miRNA:   3'- -GGGacaauGGCaGCUGCG-UGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 49457 0.66 0.945915
Target:  5'- gCCCUG-UACCGguacCuGCGCGCCAgCGu -3'
miRNA:   3'- -GGGACaAUGGCa---GcUGCGUGGUgGUc -5'
5443 5' -54.9 NC_001798.1 + 2462 0.66 0.945915
Target:  5'- gCCCUGcgggucgggGCCcUCGGCGgGCCGgCGGg -3'
miRNA:   3'- -GGGACaa-------UGGcAGCUGCgUGGUgGUC- -5'
5443 5' -54.9 NC_001798.1 + 117660 0.66 0.945915
Target:  5'- gCCCUGcaACCcgcGggGACGCGCgGCCGGc -3'
miRNA:   3'- -GGGACaaUGG---CagCUGCGUGgUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.