miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5443 5' -54.9 NC_001798.1 + 86868 0.66 0.945915
Target:  5'- aCCCgGcgGCgGUCG-CGCuuuuccGCCGCCGGg -3'
miRNA:   3'- -GGGaCaaUGgCAGCuGCG------UGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 24930 0.66 0.941441
Target:  5'- gCCUGcugagcuCCGcCGcCGCGCCGCCGc -3'
miRNA:   3'- gGGACaau----GGCaGCuGCGUGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 40308 0.66 0.941441
Target:  5'- uCCUUGUcccuccCCGUCgGGCGuCACCGCCc- -3'
miRNA:   3'- -GGGACAau----GGCAG-CUGC-GUGGUGGuc -5'
5443 5' -54.9 NC_001798.1 + 31461 0.66 0.941441
Target:  5'- cCCCc---GCCGUCucCGCGCCGCCc- -3'
miRNA:   3'- -GGGacaaUGGCAGcuGCGUGGUGGuc -5'
5443 5' -54.9 NC_001798.1 + 120308 0.66 0.941441
Target:  5'- -gCUGUUGCCcUCGAC-CGCCACgCGa -3'
miRNA:   3'- ggGACAAUGGcAGCUGcGUGGUG-GUc -5'
5443 5' -54.9 NC_001798.1 + 132111 0.67 0.937216
Target:  5'- gCCUGggGCCcgagguccugcaggCGGCccuGCGCCGCCGGg -3'
miRNA:   3'- gGGACaaUGGca------------GCUG---CGUGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 60874 0.67 0.936735
Target:  5'- cUCCgaaggGggGCgG-CGGcCGCACCGCCGGg -3'
miRNA:   3'- -GGGa----CaaUGgCaGCU-GCGUGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 143042 0.67 0.936735
Target:  5'- aCCUGcgcGgCGUUGGCGCGCUugCAc -3'
miRNA:   3'- gGGACaa-UgGCAGCUGCGUGGugGUc -5'
5443 5' -54.9 NC_001798.1 + 131385 0.67 0.936735
Target:  5'- cCCCUGgggGCC--CGGCGUcCCAUCGGg -3'
miRNA:   3'- -GGGACaa-UGGcaGCUGCGuGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 44616 0.67 0.931794
Target:  5'- cUCCUGUU-CgGUgGGCGCGCCcgugggGCCAu -3'
miRNA:   3'- -GGGACAAuGgCAgCUGCGUGG------UGGUc -5'
5443 5' -54.9 NC_001798.1 + 87464 0.67 0.931794
Target:  5'- cCCCg---GCaCGUCGGCccaccuGCACUACCGGc -3'
miRNA:   3'- -GGGacaaUG-GCAGCUG------CGUGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 134159 0.67 0.926618
Target:  5'- cCCCcGggGCCGUCGcggccgccCGCGCCGCg-- -3'
miRNA:   3'- -GGGaCaaUGGCAGCu-------GCGUGGUGguc -5'
5443 5' -54.9 NC_001798.1 + 112528 0.67 0.926618
Target:  5'- aCCCguggGUUGCUcUCGcGCGUGCCGCCc- -3'
miRNA:   3'- -GGGa---CAAUGGcAGC-UGCGUGGUGGuc -5'
5443 5' -54.9 NC_001798.1 + 72994 0.67 0.926618
Target:  5'- gCCCacgcgACCGagGACGCGCCccCCAGc -3'
miRNA:   3'- -GGGacaa-UGGCagCUGCGUGGu-GGUC- -5'
5443 5' -54.9 NC_001798.1 + 3342 0.67 0.921206
Target:  5'- uCCCgcgggcgucGUcGCCGUCGugGCgguuggcgucGCCGCCGu -3'
miRNA:   3'- -GGGa--------CAaUGGCAGCugCG----------UGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 65700 0.67 0.921206
Target:  5'- gCUCUGUU--UGUUGuGCGcCGCCACCAGg -3'
miRNA:   3'- -GGGACAAugGCAGC-UGC-GUGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 129331 0.67 0.921206
Target:  5'- gCCUGgaggacgGCCG-CGgaGCGC-CCGCCGGg -3'
miRNA:   3'- gGGACaa-----UGGCaGC--UGCGuGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 79469 0.67 0.921206
Target:  5'- cCCCgaggGCCacgagGUCGACccgcagcugcuGCGCCGCCGGg -3'
miRNA:   3'- -GGGacaaUGG-----CAGCUG-----------CGUGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 114083 0.67 0.921206
Target:  5'- cCCCggGUUACCGguaCGcCGCGgccauccugcCCACCGGc -3'
miRNA:   3'- -GGGa-CAAUGGCa--GCuGCGU----------GGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 141103 0.67 0.917846
Target:  5'- cUCCUGUcgcuacgccgggacGCCGcCGGCGCAUCggcaACCAGg -3'
miRNA:   3'- -GGGACAa-------------UGGCaGCUGCGUGG----UGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.