miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5443 5' -54.9 NC_001798.1 + 2462 0.66 0.945915
Target:  5'- gCCCUGcgggucgggGCCcUCGGCGgGCCGgCGGg -3'
miRNA:   3'- -GGGACaa-------UGGcAGCUGCgUGGUgGUC- -5'
5443 5' -54.9 NC_001798.1 + 3056 0.69 0.869605
Target:  5'- gCCagGUcGCCGUCGAaGCccuCCGCCAGc -3'
miRNA:   3'- gGGa-CAaUGGCAGCUgCGu--GGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 3285 0.66 0.950157
Target:  5'- gCUCgucgGCCGgCGACGcCGCCGCCGa -3'
miRNA:   3'- -GGGacaaUGGCaGCUGC-GUGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 3342 0.67 0.921206
Target:  5'- uCCCgcgggcgucGUcGCCGUCGugGCgguuggcgucGCCGCCGu -3'
miRNA:   3'- -GGGa--------CAaUGGCAGCugCG----------UGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 5388 0.66 0.950157
Target:  5'- uCCgUGgcggcggcCCGUUGGuCGCGCCGCCGc -3'
miRNA:   3'- -GGgACaau-----GGCAGCU-GCGUGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 9961 0.67 0.915559
Target:  5'- gUCCUGgaacaGCCGgCGuacuGCGgACCGCCAGg -3'
miRNA:   3'- -GGGACaa---UGGCaGC----UGCgUGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 10796 0.68 0.876836
Target:  5'- gCCCgagGUUAcCCGUUuccagGACGUucugggugcuGCCGCCAGg -3'
miRNA:   3'- -GGGa--CAAU-GGCAG-----CUGCG----------UGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 12632 0.68 0.903563
Target:  5'- aCCCaaaacgcaaUACCGcCGAUgaccaGCACCGCCAGg -3'
miRNA:   3'- -GGGaca------AUGGCaGCUG-----CGUGGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 20654 0.66 0.957963
Target:  5'- aCCaaccaGCCGUCuGACGCAUCAUCAu -3'
miRNA:   3'- -GGgacaaUGGCAG-CUGCGUGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 22976 0.66 0.957963
Target:  5'- gUCCgggGagGCCGUCGACGaGCCuGCCGc -3'
miRNA:   3'- -GGGa--CaaUGGCAGCUGCgUGG-UGGUc -5'
5443 5' -54.9 NC_001798.1 + 23287 0.69 0.846675
Target:  5'- gCCUGUcGCCGcgaccccCGGCGCcCCGCCGa -3'
miRNA:   3'- gGGACAaUGGCa------GCUGCGuGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 24401 0.77 0.426645
Target:  5'- gCCCcGUUGCCGUCGGCGgCGgcgUCGCCGGc -3'
miRNA:   3'- -GGGaCAAUGGCAGCUGC-GU---GGUGGUC- -5'
5443 5' -54.9 NC_001798.1 + 24930 0.66 0.941441
Target:  5'- gCCUGcugagcuCCGcCGcCGCGCCGCCGc -3'
miRNA:   3'- gGGACaau----GGCaGCuGCGUGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 25179 0.66 0.945915
Target:  5'- cCCCgcc--CCGcCGACGCcGCCGCCGc -3'
miRNA:   3'- -GGGacaauGGCaGCUGCG-UGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 26059 0.75 0.559057
Target:  5'- gCCUG-UACCc-CGACGCGCCGCCGc -3'
miRNA:   3'- gGGACaAUGGcaGCUGCGUGGUGGUc -5'
5443 5' -54.9 NC_001798.1 + 31461 0.66 0.941441
Target:  5'- cCCCc---GCCGUCucCGCGCCGCCc- -3'
miRNA:   3'- -GGGacaaUGGCAGcuGCGUGGUGGuc -5'
5443 5' -54.9 NC_001798.1 + 31587 0.67 0.909677
Target:  5'- cCCCgcgcgGCCGUCGcccCGCGCguCCGGa -3'
miRNA:   3'- -GGGacaa-UGGCAGCu--GCGUGguGGUC- -5'
5443 5' -54.9 NC_001798.1 + 37171 0.73 0.629718
Target:  5'- gCCUGgcggGCCGcUCGGCGCGCCaggcGCCGc -3'
miRNA:   3'- gGGACaa--UGGC-AGCUGCGUGG----UGGUc -5'
5443 5' -54.9 NC_001798.1 + 39107 0.69 0.830418
Target:  5'- gCCUUG--GCUGUCGACGCGgcCCGCgGGu -3'
miRNA:   3'- -GGGACaaUGGCAGCUGCGU--GGUGgUC- -5'
5443 5' -54.9 NC_001798.1 + 40308 0.66 0.941441
Target:  5'- uCCUUGUcccuccCCGUCgGGCGuCACCGCCc- -3'
miRNA:   3'- -GGGACAau----GGCAG-CUGC-GUGGUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.