miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5444 3' -51.1 NC_001798.1 + 31141 0.66 0.991482
Target:  5'- cGCCCCgGCGcggGGGCGGCGGugcGGGGg--- -3'
miRNA:   3'- uUGGGG-CGU---UCCGCUGCU---UUUCauuc -5'
5444 3' -51.1 NC_001798.1 + 2554 0.66 0.991482
Target:  5'- -cCCCCGCGggagGGGCGGCcGcgGGgcGGg -3'
miRNA:   3'- uuGGGGCGU----UCCGCUGcUuuUCauUC- -5'
5444 3' -51.1 NC_001798.1 + 108626 0.66 0.990237
Target:  5'- -uUCCCGCGGGGaGACGAcgGGg--- -3'
miRNA:   3'- uuGGGGCGUUCCgCUGCUuuUCauuc -5'
5444 3' -51.1 NC_001798.1 + 89570 0.66 0.990105
Target:  5'- gAugCCCGCcAGGCGcgcgacgGCGGAAAGc--- -3'
miRNA:   3'- -UugGGGCGuUCCGC-------UGCUUUUCauuc -5'
5444 3' -51.1 NC_001798.1 + 13391 0.66 0.988855
Target:  5'- aAGCCCCGCGcacgaucugggGGGCcuccGAUGggGcauGUAGGa -3'
miRNA:   3'- -UUGGGGCGU-----------UCCG----CUGCuuUu--CAUUC- -5'
5444 3' -51.1 NC_001798.1 + 59457 0.66 0.988855
Target:  5'- cACCCCGCGugcccGGGCG-CGguGAGg--- -3'
miRNA:   3'- uUGGGGCGU-----UCCGCuGCuuUUCauuc -5'
5444 3' -51.1 NC_001798.1 + 97586 0.66 0.988855
Target:  5'- cGGCCCCGagccaGGGGCGcaggggcCGGAGAGcUGGGg -3'
miRNA:   3'- -UUGGGGCg----UUCCGCu------GCUUUUC-AUUC- -5'
5444 3' -51.1 NC_001798.1 + 101856 0.66 0.988855
Target:  5'- -uCCCgGCGGcGGCGGaGggGGGUGGGc -3'
miRNA:   3'- uuGGGgCGUU-CCGCUgCuuUUCAUUC- -5'
5444 3' -51.1 NC_001798.1 + 14104 0.66 0.987955
Target:  5'- uACCCCggGCAcccgacacacaaucgGGGCGAUGG--GGUGGGg -3'
miRNA:   3'- uUGGGG--CGU---------------UCCGCUGCUuuUCAUUC- -5'
5444 3' -51.1 NC_001798.1 + 35797 0.66 0.987324
Target:  5'- -cCUUCGUcGGGCGGCGggGGGggGGc -3'
miRNA:   3'- uuGGGGCGuUCCGCUGCuuUUCauUC- -5'
5444 3' -51.1 NC_001798.1 + 60242 0.66 0.987324
Target:  5'- -uCCUCGC-GGGCGGC-AAAGGUGAc -3'
miRNA:   3'- uuGGGGCGuUCCGCUGcUUUUCAUUc -5'
5444 3' -51.1 NC_001798.1 + 111597 0.66 0.987324
Target:  5'- gGGCCCgGCGGGGCGGCcuccuGGAGccccgGGGg -3'
miRNA:   3'- -UUGGGgCGUUCCGCUGcu---UUUCa----UUC- -5'
5444 3' -51.1 NC_001798.1 + 132334 0.66 0.987324
Target:  5'- cACCCCGCccGGCGACGuGAccacauggggccGGUAc- -3'
miRNA:   3'- uUGGGGCGuuCCGCUGCuUU------------UCAUuc -5'
5444 3' -51.1 NC_001798.1 + 19496 0.66 0.987324
Target:  5'- -cCCCCGCuggccguuGGCGACGAGuGGc--- -3'
miRNA:   3'- uuGGGGCGuu------CCGCUGCUUuUCauuc -5'
5444 3' -51.1 NC_001798.1 + 101798 0.66 0.987324
Target:  5'- cGGCCuCCGCGccGGGCGccuCGGguuGGGGUAAGc -3'
miRNA:   3'- -UUGG-GGCGU--UCCGCu--GCU---UUUCAUUC- -5'
5444 3' -51.1 NC_001798.1 + 16990 0.66 0.987163
Target:  5'- cAACUCCGCGgcgcuuGGGCGgaGCGccgcgucAAAGGUAAGg -3'
miRNA:   3'- -UUGGGGCGU------UCCGC--UGC-------UUUUCAUUC- -5'
5444 3' -51.1 NC_001798.1 + 153782 0.66 0.985637
Target:  5'- cGGCCCgcgcuccuugCGCGGcGGCGGCGggGGGcAGGc -3'
miRNA:   3'- -UUGGG----------GCGUU-CCGCUGCuuUUCaUUC- -5'
5444 3' -51.1 NC_001798.1 + 41458 0.66 0.985637
Target:  5'- uGCCCCGCcgGGGGgGGCGGucGGcGGGc -3'
miRNA:   3'- uUGGGGCG--UUCCgCUGCUuuUCaUUC- -5'
5444 3' -51.1 NC_001798.1 + 27213 0.66 0.985637
Target:  5'- aAGCCCCcgggGCGGGGCG-CgGggGAGgcGGc -3'
miRNA:   3'- -UUGGGG----CGUUCCGCuG-CuuUUCauUC- -5'
5444 3' -51.1 NC_001798.1 + 124495 0.67 0.983782
Target:  5'- -cCCCCGCcauGGCGGgGggGGGg--- -3'
miRNA:   3'- uuGGGGCGuu-CCGCUgCuuUUCauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.