miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5444 3' -51.1 NC_001798.1 + 85987 0.67 0.983782
Target:  5'- aGGCCgCCGcCGGGGCGcuggcGCaGggGGGUGAGc -3'
miRNA:   3'- -UUGG-GGC-GUUCCGC-----UG-CuuUUCAUUC- -5'
5444 3' -51.1 NC_001798.1 + 107445 0.67 0.983782
Target:  5'- cGACCCCGCGccccgaccccgAGGaCGGCGcgGGGUc-- -3'
miRNA:   3'- -UUGGGGCGU-----------UCC-GCUGCuuUUCAuuc -5'
5444 3' -51.1 NC_001798.1 + 124495 0.67 0.983782
Target:  5'- -cCCCCGCcauGGCGGgGggGGGg--- -3'
miRNA:   3'- uuGGGGCGuu-CCGCUgCuuUUCauuc -5'
5444 3' -51.1 NC_001798.1 + 28669 0.67 0.983782
Target:  5'- cGGCgCCGCGuGGCGGCGGccGAGgcGGu -3'
miRNA:   3'- -UUGgGGCGUuCCGCUGCUu-UUCauUC- -5'
5444 3' -51.1 NC_001798.1 + 105199 0.67 0.981752
Target:  5'- gGGCCCgCGguGGGCGACGGc------- -3'
miRNA:   3'- -UUGGG-GCguUCCGCUGCUuuucauuc -5'
5444 3' -51.1 NC_001798.1 + 76080 0.67 0.981752
Target:  5'- cAGgCCCGCcGGGCGAuCGAGAgcgcGGUcAAGg -3'
miRNA:   3'- -UUgGGGCGuUCCGCU-GCUUU----UCA-UUC- -5'
5444 3' -51.1 NC_001798.1 + 75118 0.67 0.980446
Target:  5'- -cCCCCGCAGuccgggcagggcggcGGCGACGAcgGGc--- -3'
miRNA:   3'- uuGGGGCGUU---------------CCGCUGCUuuUCauuc -5'
5444 3' -51.1 NC_001798.1 + 136634 0.67 0.979537
Target:  5'- gAGCUCUGCGGGGUGGCGcaaaacagggccGAGAGgacgGGGg -3'
miRNA:   3'- -UUGGGGCGUUCCGCUGC------------UUUUCa---UUC- -5'
5444 3' -51.1 NC_001798.1 + 2395 0.67 0.979537
Target:  5'- aGGCCUC-CAGGGCGGCGGccGAGGg--- -3'
miRNA:   3'- -UUGGGGcGUUCCGCUGCU--UUUCauuc -5'
5444 3' -51.1 NC_001798.1 + 142219 0.67 0.979537
Target:  5'- uGCCCCGCgGAGGCGugGuGAu----- -3'
miRNA:   3'- uUGGGGCG-UUCCGCugCuUUucauuc -5'
5444 3' -51.1 NC_001798.1 + 28181 0.67 0.979537
Target:  5'- cAGCCCCccgaGCgAGGGCGGgGGGAAGgcgccgGAGg -3'
miRNA:   3'- -UUGGGG----CG-UUCCGCUgCUUUUCa-----UUC- -5'
5444 3' -51.1 NC_001798.1 + 43907 0.67 0.978836
Target:  5'- uGGCUCUGCAAcagaaccgagugauGGCGGCGAacGAGGUcAAGg -3'
miRNA:   3'- -UUGGGGCGUU--------------CCGCUGCU--UUUCA-UUC- -5'
5444 3' -51.1 NC_001798.1 + 80545 0.67 0.977129
Target:  5'- cGGCCCgGCGGGGgGGCGcGAGGc--- -3'
miRNA:   3'- -UUGGGgCGUUCCgCUGCuUUUCauuc -5'
5444 3' -51.1 NC_001798.1 + 12025 0.67 0.977129
Target:  5'- cGCCaCgGCGGGGCGGCGggGgcaugcggucAGUGu- -3'
miRNA:   3'- uUGG-GgCGUUCCGCUGCuuU----------UCAUuc -5'
5444 3' -51.1 NC_001798.1 + 18212 0.67 0.977129
Target:  5'- cAGCCUCGCcGGGgGACGguGGGcGGGa -3'
miRNA:   3'- -UUGGGGCGuUCCgCUGCuuUUCaUUC- -5'
5444 3' -51.1 NC_001798.1 + 152646 0.67 0.974518
Target:  5'- cGCCCCGCcGGcGCGGCccuGAGUGGu -3'
miRNA:   3'- uUGGGGCGuUC-CGCUGcuuUUCAUUc -5'
5444 3' -51.1 NC_001798.1 + 107747 0.67 0.974518
Target:  5'- --gCCCGCGAGGUGG-GggGAGUu-- -3'
miRNA:   3'- uugGGGCGUUCCGCUgCuuUUCAuuc -5'
5444 3' -51.1 NC_001798.1 + 35413 0.67 0.974518
Target:  5'- gAugCCCGCGGGggccuaauGCGGCGGGAGgcGUGGGc -3'
miRNA:   3'- -UugGGGCGUUC--------CGCUGCUUUU--CAUUC- -5'
5444 3' -51.1 NC_001798.1 + 27123 0.67 0.974518
Target:  5'- -cCCCCGCAGGaGCGGgaGGGAAGg--- -3'
miRNA:   3'- uuGGGGCGUUC-CGCUg-CUUUUCauuc -5'
5444 3' -51.1 NC_001798.1 + 40880 0.68 0.971697
Target:  5'- cAGCUCCGuCAGGGCGAUGAu-GGa--- -3'
miRNA:   3'- -UUGGGGC-GUUCCGCUGCUuuUCauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.