miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5444 5' -62.9 NC_001798.1 + 35733 0.66 0.630773
Target:  5'- cCGCCAuccuCCcGCCCgGCCgCCCAc-- -3'
miRNA:   3'- -GCGGUuu--GGcCGGGgCGGgGGGUucu -5'
5444 5' -62.9 NC_001798.1 + 50409 0.66 0.630773
Target:  5'- gCGaCCGGGCggCGcGCCCC-CCCCCCAc-- -3'
miRNA:   3'- -GC-GGUUUG--GC-CGGGGcGGGGGGUucu -5'
5444 5' -62.9 NC_001798.1 + 51130 0.66 0.630773
Target:  5'- gCGCCGucGCCGGgaggCCCGCggucaCCCCGGGu -3'
miRNA:   3'- -GCGGUu-UGGCCg---GGGCGg----GGGGUUCu -5'
5444 5' -62.9 NC_001798.1 + 66736 0.66 0.630773
Target:  5'- gGCUguccaGAACCGGCgCCaCGUCCgCCUggGGu -3'
miRNA:   3'- gCGG-----UUUGGCCG-GG-GCGGG-GGGuuCU- -5'
5444 5' -62.9 NC_001798.1 + 71731 0.66 0.630773
Target:  5'- gCGCC-GGCCaGCCCaGCCUCCUgcgcGAGAc -3'
miRNA:   3'- -GCGGuUUGGcCGGGgCGGGGGG----UUCU- -5'
5444 5' -62.9 NC_001798.1 + 127989 0.66 0.630773
Target:  5'- gGCCucauCCGG-CCCGCcaaCCCCCGAc- -3'
miRNA:   3'- gCGGuuu-GGCCgGGGCG---GGGGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 62334 0.66 0.630773
Target:  5'- aCGCUGAcCgCGGCCCCGgUcggCCUCGAGAc -3'
miRNA:   3'- -GCGGUUuG-GCCGGGGCgG---GGGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 81910 0.66 0.630773
Target:  5'- uGCCccuuccgcCCGGCCCCGCCUCggcucgCGGGGc -3'
miRNA:   3'- gCGGuuu-----GGCCGGGGCGGGGg-----GUUCU- -5'
5444 5' -62.9 NC_001798.1 + 82312 0.66 0.630773
Target:  5'- uGCCcggAGGcCCGGuugcCCgCCGCCCCCCAc-- -3'
miRNA:   3'- gCGG---UUU-GGCC----GG-GGCGGGGGGUucu -5'
5444 5' -62.9 NC_001798.1 + 40797 0.66 0.629797
Target:  5'- aCGCCcGACCa-CCCuuuggagCGCCCCCUggGGg -3'
miRNA:   3'- -GCGGuUUGGccGGG-------GCGGGGGGuuCU- -5'
5444 5' -62.9 NC_001798.1 + 127667 0.66 0.629797
Target:  5'- aCGCCAAcCCGGCCgCgCGCCaCUCUcugucguGAGGa -3'
miRNA:   3'- -GCGGUUuGGCCGG-G-GCGG-GGGG-------UUCU- -5'
5444 5' -62.9 NC_001798.1 + 26554 0.66 0.621019
Target:  5'- cCGCCGcggGGCUGGCCaCGCCgCCgAGGc -3'
miRNA:   3'- -GCGGU---UUGGCCGGgGCGGgGGgUUCu -5'
5444 5' -62.9 NC_001798.1 + 70206 0.66 0.621019
Target:  5'- cCGCC-GGCC-GCCCUcCCCCUCGAGc -3'
miRNA:   3'- -GCGGuUUGGcCGGGGcGGGGGGUUCu -5'
5444 5' -62.9 NC_001798.1 + 76565 0.66 0.621019
Target:  5'- gGCCuucgucccggcGACCGGCCCCGCgCCgUAc-- -3'
miRNA:   3'- gCGGu----------UUGGCCGGGGCGgGGgGUucu -5'
5444 5' -62.9 NC_001798.1 + 128295 0.66 0.621019
Target:  5'- gCGCCuga-CGcGCCgCGCCCCCCc--- -3'
miRNA:   3'- -GCGGuuugGC-CGGgGCGGGGGGuucu -5'
5444 5' -62.9 NC_001798.1 + 134794 0.66 0.621019
Target:  5'- aCGCCGcccCCGgaGCCCUGgCCCCCGu-- -3'
miRNA:   3'- -GCGGUuu-GGC--CGGGGCgGGGGGUucu -5'
5444 5' -62.9 NC_001798.1 + 137131 0.66 0.621019
Target:  5'- --aCGAACCGcaaCCGCCCCCUggGGg -3'
miRNA:   3'- gcgGUUUGGCcggGGCGGGGGGuuCU- -5'
5444 5' -62.9 NC_001798.1 + 3054 0.66 0.621019
Target:  5'- cCGCCAGgucGCCGucgaaGCCCUccgccaGCgCCUCCAGGAu -3'
miRNA:   3'- -GCGGUU---UGGC-----CGGGG------CG-GGGGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 4958 0.66 0.621019
Target:  5'- cCGCCAucgcGACCucGGCCCCGCggCCCUg--- -3'
miRNA:   3'- -GCGGU----UUGG--CCGGGGCGg-GGGGuucu -5'
5444 5' -62.9 NC_001798.1 + 9148 0.66 0.621019
Target:  5'- aCG-CGGGCgCGGCgCCGCCCgCgCCGGGGg -3'
miRNA:   3'- -GCgGUUUG-GCCGgGGCGGG-G-GGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.