miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5444 5' -62.9 NC_001798.1 + 74635 0.85 0.036506
Target:  5'- gGCC-GACCGGCCCCccgagGCCCCCCGGGGg -3'
miRNA:   3'- gCGGuUUGGCCGGGG-----CGGGGGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 126277 0.84 0.044936
Target:  5'- aCGCCcAAgCGGCCCCuCCCCCCGAGAc -3'
miRNA:   3'- -GCGGuUUgGCCGGGGcGGGGGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 25093 0.8 0.085353
Target:  5'- cCGCCGGGCgGcGCCCCGCgCCCCCcgAAGAa -3'
miRNA:   3'- -GCGGUUUGgC-CGGGGCG-GGGGG--UUCU- -5'
5444 5' -62.9 NC_001798.1 + 153048 0.79 0.101846
Target:  5'- gCGCgGuuGGCCGGCgCCGCCCCCUggGGc -3'
miRNA:   3'- -GCGgU--UUGGCCGgGGCGGGGGGuuCU- -5'
5444 5' -62.9 NC_001798.1 + 23809 0.79 0.109798
Target:  5'- gGCCcgGGGCCGGCCCCcCgCCCCCGGGGc -3'
miRNA:   3'- gCGG--UUUGGCCGGGGcG-GGGGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 7632 0.78 0.11833
Target:  5'- cCGCgCGGACCGGCCCCcggaGUCCCCCGGc- -3'
miRNA:   3'- -GCG-GUUUGGCCGGGG----CGGGGGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 97927 0.78 0.124049
Target:  5'- gCGCCAccaggugGAcCCGGCCCUGCUCCCCAGc- -3'
miRNA:   3'- -GCGGU-------UU-GGCCGGGGCGGGGGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 54861 0.77 0.131964
Target:  5'- cCGCCuGGCCGGCcgaaagccacgccccCCCGCCCCCUccGAGGa -3'
miRNA:   3'- -GCGGuUUGGCCG---------------GGGCGGGGGG--UUCU- -5'
5444 5' -62.9 NC_001798.1 + 74987 0.77 0.137272
Target:  5'- cCGCCcccaaGGCCCCGCCCgCCAAGGc -3'
miRNA:   3'- -GCGGuuuggCCGGGGCGGGgGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 25437 0.77 0.140689
Target:  5'- gCGCUgcGCC-GCCCCGCCCCCCGGc- -3'
miRNA:   3'- -GCGGuuUGGcCGGGGCGGGGGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 9536 0.77 0.144183
Target:  5'- uCGCCGAGgcCCGGCUuuuaaCCGCCCgCCAGGAg -3'
miRNA:   3'- -GCGGUUU--GGCCGG-----GGCGGGgGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 126439 0.77 0.147756
Target:  5'- gGCCAAGCUaaGGCgCCCGCCCCugcgcagguCCGAGAc -3'
miRNA:   3'- gCGGUUUGG--CCG-GGGCGGGG---------GGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 31947 0.76 0.158964
Target:  5'- cCGCCGccCCGcgcucGCCCCucGCCCCCCAGGGg -3'
miRNA:   3'- -GCGGUuuGGC-----CGGGG--CGGGGGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 81759 0.76 0.162867
Target:  5'- uGCCAAAUCgcgcgcgccccgGGCCuCCGCCCCCCccGAGGg -3'
miRNA:   3'- gCGGUUUGG------------CCGG-GGCGGGGGG--UUCU- -5'
5444 5' -62.9 NC_001798.1 + 46397 0.76 0.162867
Target:  5'- gCGCCGucuGGCCGGCagggccaCCGCCCCCCcGGc -3'
miRNA:   3'- -GCGGU---UUGGCCGg------GGCGGGGGGuUCu -5'
5444 5' -62.9 NC_001798.1 + 93746 0.76 0.162867
Target:  5'- aCGCUGAugCGGCugcgggCCCGCCaCCCCAAGu -3'
miRNA:   3'- -GCGGUUugGCCG------GGGCGG-GGGGUUCu -5'
5444 5' -62.9 NC_001798.1 + 21318 0.75 0.175099
Target:  5'- gGCCcc-CCGGCCCCccgGCCCCCCGGc- -3'
miRNA:   3'- gCGGuuuGGCCGGGG---CGGGGGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 73232 0.75 0.179355
Target:  5'- gGCCuuccGCCGGCCCggggGCCCCCgGGGAc -3'
miRNA:   3'- gCGGuu--UGGCCGGGg---CGGGGGgUUCU- -5'
5444 5' -62.9 NC_001798.1 + 47830 0.75 0.1868
Target:  5'- gGCC---CCGGCCCCGCgcgcgcuccuccacCCCCCGGGGg -3'
miRNA:   3'- gCGGuuuGGCCGGGGCG--------------GGGGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 118427 0.75 0.192677
Target:  5'- uGCUGAGCCcuGCCCCGCCCCCUc--- -3'
miRNA:   3'- gCGGUUUGGc-CGGGGCGGGGGGuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.