miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5444 5' -62.9 NC_001798.1 + 285 0.71 0.354633
Target:  5'- -cCCAAGCU--CCCCGCCCCCCcgAAGAc -3'
miRNA:   3'- gcGGUUUGGccGGGGCGGGGGG--UUCU- -5'
5444 5' -62.9 NC_001798.1 + 410 0.68 0.469958
Target:  5'- cCGCCGAGCuCGcggcaGCCCCuCCCCCCc--- -3'
miRNA:   3'- -GCGGUUUG-GC-----CGGGGcGGGGGGuucu -5'
5444 5' -62.9 NC_001798.1 + 482 0.69 0.418082
Target:  5'- cCGCCucccCCGcGCCCCGCCCC--GGGGg -3'
miRNA:   3'- -GCGGuuu-GGC-CGGGGCGGGGggUUCU- -5'
5444 5' -62.9 NC_001798.1 + 677 0.67 0.534327
Target:  5'- cCGCCcgcCCGacCCCCGCCCgCCCGAc- -3'
miRNA:   3'- -GCGGuuuGGCc-GGGGCGGG-GGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 707 0.67 0.534327
Target:  5'- cCGCCcgcCCGacCCCCGCCCgCCCGAc- -3'
miRNA:   3'- -GCGGuuuGGCc-GGGGCGGG-GGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 737 0.67 0.534327
Target:  5'- cCGCCcgcCCGacCCCCGCCCgCCCGAc- -3'
miRNA:   3'- -GCGGuuuGGCc-GGGGCGGG-GGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 767 0.67 0.534327
Target:  5'- cCGCCcgcCCGacCCCCGCCCgCCCGAc- -3'
miRNA:   3'- -GCGGuuuGGCc-GGGGCGGG-GGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 797 0.67 0.534327
Target:  5'- cCGCCcgcCCGacCCCCGCCCgCCCGAc- -3'
miRNA:   3'- -GCGGuuuGGCc-GGGGCGGG-GGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 827 0.67 0.534327
Target:  5'- cCGCCcgcCCGacCCCCGCCCgCCCGAc- -3'
miRNA:   3'- -GCGGuuuGGCc-GGGGCGGG-GGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 857 0.67 0.534327
Target:  5'- cCGCCcgcCCGacCCCCGCCCgCCCGAc- -3'
miRNA:   3'- -GCGGuuuGGCc-GGGGCGGG-GGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 887 0.67 0.534327
Target:  5'- cCGCCcgcCCGacCCCCGCCCgCCCGAc- -3'
miRNA:   3'- -GCGGuuuGGCc-GGGGCGGG-GGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 1150 0.66 0.621019
Target:  5'- gGCguGGCCaGCCCCGCggcggUCCCCAc-- -3'
miRNA:   3'- gCGguUUGGcCGGGGCG-----GGGGGUucu -5'
5444 5' -62.9 NC_001798.1 + 1366 0.68 0.48797
Target:  5'- cCGCCGcGCaCGGCgUCGCgCCCCAGc- -3'
miRNA:   3'- -GCGGUuUG-GCCGgGGCGgGGGGUUcu -5'
5444 5' -62.9 NC_001798.1 + 1480 0.69 0.426487
Target:  5'- gCGCCGGGCgccaUGGCgUCGCCCgcgCCCGAGGc -3'
miRNA:   3'- -GCGGUUUG----GCCGgGGCGGG---GGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 1885 0.66 0.582147
Target:  5'- uCGCaggcGCCGGCCa-GCagCCCCAGGAa -3'
miRNA:   3'- -GCGguu-UGGCCGGggCGg-GGGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 1976 0.66 0.601542
Target:  5'- gCGCCGAgacgucggggGCgCGGUCCaguuGCCCgCCCAGGc -3'
miRNA:   3'- -GCGGUU----------UG-GCCGGGg---CGGG-GGGUUCu -5'
5444 5' -62.9 NC_001798.1 + 2812 0.69 0.443593
Target:  5'- gCGCCGGGCCcagGGCCCCGgCgaCCAGGc -3'
miRNA:   3'- -GCGGUUUGG---CCGGGGCgGggGGUUCu -5'
5444 5' -62.9 NC_001798.1 + 3054 0.66 0.621019
Target:  5'- cCGCCAGgucGCCGucgaaGCCCUccgccaGCgCCUCCAGGAu -3'
miRNA:   3'- -GCGGUU---UGGC-----CGGGG------CG-GGGGGUUCU- -5'
5444 5' -62.9 NC_001798.1 + 3135 0.68 0.469958
Target:  5'- cCGCCuccgcgcGCCGGCCgCCGCCaCCaCCGc-- -3'
miRNA:   3'- -GCGGuu-----UGGCCGG-GGCGG-GG-GGUucu -5'
5444 5' -62.9 NC_001798.1 + 3537 0.72 0.272819
Target:  5'- aGCCGAAgCGGCCcgCCGCCauggcguaCCCCAGGu -3'
miRNA:   3'- gCGGUUUgGCCGG--GGCGG--------GGGGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.