miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5445 3' -57.7 NC_001798.1 + 24069 0.66 0.866152
Target:  5'- uGGAccaGgcCUGCUUCCGGAUCUcgGGCGc -3'
miRNA:   3'- gCCU---CaaGGCGGAGGUCUAGA--CCGCa -5'
5445 3' -57.7 NC_001798.1 + 3689 0.66 0.866152
Target:  5'- uGGAGccaccccaUCGCCUCCGcGUCcGGCGUg -3'
miRNA:   3'- gCCUCaa------GGCGGAGGUcUAGaCCGCA- -5'
5445 3' -57.7 NC_001798.1 + 134737 0.66 0.858663
Target:  5'- aCGG-GUucUCCGCC-CCGGcgCUGGUc- -3'
miRNA:   3'- -GCCuCA--AGGCGGaGGUCuaGACCGca -5'
5445 3' -57.7 NC_001798.1 + 26201 0.66 0.850975
Target:  5'- cCGGGccgCCGCCUCgGGcgCgGGCGa -3'
miRNA:   3'- -GCCUcaaGGCGGAGgUCuaGaCCGCa -5'
5445 3' -57.7 NC_001798.1 + 77782 0.66 0.835026
Target:  5'- -cGAGcugcgCCGCCUgCAGGcgCUGGCGg -3'
miRNA:   3'- gcCUCaa---GGCGGAgGUCUa-GACCGCa -5'
5445 3' -57.7 NC_001798.1 + 89121 0.66 0.826778
Target:  5'- aGGuAGUcccggUCCGCCUCCAGG--UGcGCGa -3'
miRNA:   3'- gCC-UCA-----AGGCGGAGGUCUagAC-CGCa -5'
5445 3' -57.7 NC_001798.1 + 25627 0.67 0.795716
Target:  5'- cCGGAGUggUCCGCCgagcgcggcgggcugUCCuGccugCUGGCGg -3'
miRNA:   3'- -GCCUCA--AGGCGG---------------AGGuCua--GACCGCa -5'
5445 3' -57.7 NC_001798.1 + 130224 0.67 0.783113
Target:  5'- gGGGGuUUCCGCgUagcCCGGGUCUccgGGCGg -3'
miRNA:   3'- gCCUC-AAGGCGgA---GGUCUAGA---CCGCa -5'
5445 3' -57.7 NC_001798.1 + 129033 0.67 0.773951
Target:  5'- aGGcgauGcUCCGCC-CCGGAUCgGGCGc -3'
miRNA:   3'- gCCu---CaAGGCGGaGGUCUAGaCCGCa -5'
5445 3' -57.7 NC_001798.1 + 45929 0.67 0.773951
Target:  5'- gGGGGUggcggUCGCgUCCGGAaccccUCUGGgGUa -3'
miRNA:   3'- gCCUCAa----GGCGgAGGUCU-----AGACCgCA- -5'
5445 3' -57.7 NC_001798.1 + 137901 0.68 0.745759
Target:  5'- cCGGAGaagaUCCGCCUCCGccg--GGCGg -3'
miRNA:   3'- -GCCUCa---AGGCGGAGGUcuagaCCGCa -5'
5445 3' -57.7 NC_001798.1 + 24603 0.68 0.744803
Target:  5'- uGGAGUgccuggCCGCCUgCCgcgggauccuggaGGcgCUGGCGg -3'
miRNA:   3'- gCCUCAa-----GGCGGA-GG-------------UCuaGACCGCa -5'
5445 3' -57.7 NC_001798.1 + 68589 0.68 0.723543
Target:  5'- -cGAGggCCGCCUCCAGuccgcgcggggggagCUGGCu- -3'
miRNA:   3'- gcCUCaaGGCGGAGGUCua-------------GACCGca -5'
5445 3' -57.7 NC_001798.1 + 103093 0.69 0.706855
Target:  5'- aCGGAGcgauggCCGCgUCUAGG-CUGGUGUc -3'
miRNA:   3'- -GCCUCaa----GGCGgAGGUCUaGACCGCA- -5'
5445 3' -57.7 NC_001798.1 + 32252 0.69 0.666966
Target:  5'- gGGAGcgucgcgUCCGCgUCCGGcgCUGGgGa -3'
miRNA:   3'- gCCUCa------AGGCGgAGGUCuaGACCgCa -5'
5445 3' -57.7 NC_001798.1 + 109451 0.7 0.636729
Target:  5'- uGGAGgcgCGCCUCgGGcAUCUGGUGg -3'
miRNA:   3'- gCCUCaagGCGGAGgUC-UAGACCGCa -5'
5445 3' -57.7 NC_001798.1 + 5322 0.7 0.63471
Target:  5'- cCGGGGUUCCGCCcCCAGGUggaaccgcauuaUGcGCGg -3'
miRNA:   3'- -GCCUCAAGGCGGaGGUCUAg-----------AC-CGCa -5'
5445 3' -57.7 NC_001798.1 + 35521 0.71 0.586362
Target:  5'- aGGGGUucucUCCGCCgcggCCGGcgCggGGCGUu -3'
miRNA:   3'- gCCUCA----AGGCGGa---GGUCuaGa-CCGCA- -5'
5445 3' -57.7 NC_001798.1 + 85978 0.73 0.470095
Target:  5'- gGGAGUUcgaggCCGCCgCCGGGgcgCUGGCGc -3'
miRNA:   3'- gCCUCAA-----GGCGGaGGUCUa--GACCGCa -5'
5445 3' -57.7 NC_001798.1 + 41067 0.73 0.46457
Target:  5'- cCGGA--UCCGCCUCgaacagcugcaccaGGGUCUGGCGUu -3'
miRNA:   3'- -GCCUcaAGGCGGAGg-------------UCUAGACCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.