miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5445 5' -58.2 NC_001798.1 + 24550 0.66 0.850112
Target:  5'- cGGCGCCGGcGGUgGuGGCGGCgGCCg- -3'
miRNA:   3'- cCUGCGGCU-CUAgCcUUGCCG-CGGau -5'
5445 5' -58.2 NC_001798.1 + 72473 0.66 0.850112
Target:  5'- -uACGCCGuGGUCGcaGAcgcccACGaGCGCCUGg -3'
miRNA:   3'- ccUGCGGCuCUAGC--CU-----UGC-CGCGGAU- -5'
5445 5' -58.2 NC_001798.1 + 22746 0.66 0.850112
Target:  5'- cGGgGCCGAGGUCGcGAUGGCGg--- -3'
miRNA:   3'- cCUgCGGCUCUAGCcUUGCCGCggau -5'
5445 5' -58.2 NC_001798.1 + 105198 0.66 0.850112
Target:  5'- gGGGC-CCGcGGUgGGcGACGGCGCUg- -3'
miRNA:   3'- -CCUGcGGCuCUAgCC-UUGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 2609 0.66 0.850112
Target:  5'- gGGGCGCgGGGcgCcGcccGGCGGCGCCc- -3'
miRNA:   3'- -CCUGCGgCUCuaGcC---UUGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 8854 0.66 0.84543
Target:  5'- cGGcGgGCCGGGAggucaucgcggacgCGGAAgGGCGCUg- -3'
miRNA:   3'- -CC-UgCGGCUCUa-------------GCCUUgCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 13483 0.66 0.842271
Target:  5'- gGGAUGCUGGGGggcUGGAACGG-GuCCUc -3'
miRNA:   3'- -CCUGCGGCUCUa--GCCUUGCCgC-GGAu -5'
5445 5' -58.2 NC_001798.1 + 54796 0.66 0.842271
Target:  5'- uGACGCCGccaugcccgcgGGcGUCGGGcuUGGCGCCa- -3'
miRNA:   3'- cCUGCGGC-----------UC-UAGCCUu-GCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 135487 0.66 0.842271
Target:  5'- uGGACcCCGGGGacgCGGAcgccgcgcACGGCGCg-- -3'
miRNA:   3'- -CCUGcGGCUCUa--GCCU--------UGCCGCGgau -5'
5445 5' -58.2 NC_001798.1 + 65525 0.66 0.842271
Target:  5'- cGcCGUCGAGGUggCGGAucaGGCGCUUGa -3'
miRNA:   3'- cCuGCGGCUCUA--GCCUug-CCGCGGAU- -5'
5445 5' -58.2 NC_001798.1 + 16063 0.66 0.834247
Target:  5'- aGGuCGCUGGGggCGGcg-GGCGUCUGu -3'
miRNA:   3'- -CCuGCGGCUCuaGCCuugCCGCGGAU- -5'
5445 5' -58.2 NC_001798.1 + 30157 0.66 0.834247
Target:  5'- gGGGgGCCGGGGUgagggagggacaCGGGggacACGGCGCg-- -3'
miRNA:   3'- -CCUgCGGCUCUA------------GCCU----UGCCGCGgau -5'
5445 5' -58.2 NC_001798.1 + 39575 0.66 0.834247
Target:  5'- -cGCGCCGAcg-CGGggUGGCGaCCc- -3'
miRNA:   3'- ccUGCGGCUcuaGCCuuGCCGC-GGau -5'
5445 5' -58.2 NC_001798.1 + 78036 0.66 0.834247
Target:  5'- cGACGCCGAGccccUGGcGCGGCuGCUg- -3'
miRNA:   3'- cCUGCGGCUCua--GCCuUGCCG-CGGau -5'
5445 5' -58.2 NC_001798.1 + 135852 0.66 0.834247
Target:  5'- uGGAUGCCu---UCGGGA-GGCGUCUGg -3'
miRNA:   3'- -CCUGCGGcucuAGCCUUgCCGCGGAU- -5'
5445 5' -58.2 NC_001798.1 + 75650 0.66 0.834247
Target:  5'- uGGuCGCCaGGGAcguuauUCGGGagACGGaCGCCUu -3'
miRNA:   3'- -CCuGCGG-CUCU------AGCCU--UGCC-GCGGAu -5'
5445 5' -58.2 NC_001798.1 + 108941 0.66 0.834247
Target:  5'- gGGACagcccuccgGCCGAGAUCauAGUGGUGCCUGc -3'
miRNA:   3'- -CCUG---------CGGCUCUAGccUUGCCGCGGAU- -5'
5445 5' -58.2 NC_001798.1 + 147178 0.66 0.826046
Target:  5'- cGGCGCCGGG--CGGAA-GGCGUCc- -3'
miRNA:   3'- cCUGCGGCUCuaGCCUUgCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 103555 0.66 0.826046
Target:  5'- uGGGCaCCGcccGGUCGGGcagaGGCGCCUc -3'
miRNA:   3'- -CCUGcGGCu--CUAGCCUug--CCGCGGAu -5'
5445 5' -58.2 NC_001798.1 + 103266 0.66 0.826046
Target:  5'- aGACGCUccucccggGAGAgcgCGGGuccGCGGCGCUc- -3'
miRNA:   3'- cCUGCGG--------CUCUa--GCCU---UGCCGCGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.