miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5445 5' -58.2 NC_001798.1 + 22340 0.81 0.147161
Target:  5'- cGGACGCgCGGGcGUCGGGGCGGgGCCg- -3'
miRNA:   3'- -CCUGCG-GCUC-UAGCCUUGCCgCGGau -5'
5445 5' -58.2 NC_001798.1 + 153059 0.77 0.285186
Target:  5'- cGGCGCCGcccccuggggcgggcGGAgcggCGGGGCGGCGCCg- -3'
miRNA:   3'- cCUGCGGC---------------UCUa---GCCUUGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 153572 0.76 0.309485
Target:  5'- gGGGCGUCagGGGGUCGGAGgGGCGUCa- -3'
miRNA:   3'- -CCUGCGG--CUCUAGCCUUgCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 153534 0.76 0.309485
Target:  5'- gGGGCGUCagGGGGUCGGAGgGGCGUCa- -3'
miRNA:   3'- -CCUGCGG--CUCUAGCCUUgCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 153610 0.76 0.309485
Target:  5'- gGGGCGUCagGGGGUCGGAGgGGCGUCa- -3'
miRNA:   3'- -CCUGCGG--CUCUAGCCUUgCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 27545 0.76 0.323653
Target:  5'- cGGCGCgCGGGGggaGGGGCGGCGCCc- -3'
miRNA:   3'- cCUGCG-GCUCUag-CCUUGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 23740 0.75 0.361157
Target:  5'- uGGACGCCGAcg-CGGccucCGGCGCCUu -3'
miRNA:   3'- -CCUGCGGCUcuaGCCuu--GCCGCGGAu -5'
5445 5' -58.2 NC_001798.1 + 4745 0.74 0.389976
Target:  5'- cGGACGCCGGGGccgccucgucggcaUCGGcaucggcGGCGGCGUCg- -3'
miRNA:   3'- -CCUGCGGCUCU--------------AGCC-------UUGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 2254 0.74 0.39327
Target:  5'- cGGGCgcgccGCCGGGGggCGGGGCGGCGCa-- -3'
miRNA:   3'- -CCUG-----CGGCUCUa-GCCUUGCCGCGgau -5'
5445 5' -58.2 NC_001798.1 + 154091 0.73 0.435924
Target:  5'- uGGAgCGCCGGGGcgCGGc-CGGCGCCg- -3'
miRNA:   3'- -CCU-GCGGCUCUa-GCCuuGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 66874 0.73 0.452819
Target:  5'- gGGGCGCCGGGGcUUGGGaaaggccacggggGCGGgGCCg- -3'
miRNA:   3'- -CCUGCGGCUCU-AGCCU-------------UGCCgCGGau -5'
5445 5' -58.2 NC_001798.1 + 56722 0.73 0.453718
Target:  5'- -uGCGCCGAGAgaacgacaCGGAgucGCGGUGCCa- -3'
miRNA:   3'- ccUGCGGCUCUa-------GCCU---UGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 29412 0.72 0.49419
Target:  5'- gGGGCGCCGGGGggacucccaucugcgUCGGcggggGGCGGCGCa-- -3'
miRNA:   3'- -CCUGCGGCUCU---------------AGCC-----UUGCCGCGgau -5'
5445 5' -58.2 NC_001798.1 + 23946 0.72 0.499838
Target:  5'- uGGGCGCCGAGcUgGGcgacGCGGCGCa-- -3'
miRNA:   3'- -CCUGCGGCUCuAgCCu---UGCCGCGgau -5'
5445 5' -58.2 NC_001798.1 + 149970 0.72 0.518866
Target:  5'- aGACGCCGA---CGGGggcGCGGCGCCc- -3'
miRNA:   3'- cCUGCGGCUcuaGCCU---UGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 34741 0.71 0.54792
Target:  5'- cGGGC-CCGGGAgCGGGGCGGC-CCg- -3'
miRNA:   3'- -CCUGcGGCUCUaGCCUUGCCGcGGau -5'
5445 5' -58.2 NC_001798.1 + 22272 0.71 0.54792
Target:  5'- cGGGCGCUaauGAGAUgccgcgcgggCGGAGCGGCGgCg- -3'
miRNA:   3'- -CCUGCGG---CUCUA----------GCCUUGCCGCgGau -5'
5445 5' -58.2 NC_001798.1 + 52786 0.71 0.556739
Target:  5'- cGGGCGcCCGuGAgCGGGACGGCagaccccGCCUu -3'
miRNA:   3'- -CCUGC-GGCuCUaGCCUUGCCG-------CGGAu -5'
5445 5' -58.2 NC_001798.1 + 25087 0.71 0.577467
Target:  5'- aGGGCGCCGc---CGG-GCGGCGCCc- -3'
miRNA:   3'- -CCUGCGGCucuaGCCuUGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 149996 0.71 0.577467
Target:  5'- cGGACGCCGGGG-C-GAGCGGC-CCg- -3'
miRNA:   3'- -CCUGCGGCUCUaGcCUUGCCGcGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.