miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5445 5' -58.2 NC_001798.1 + 103555 0.66 0.826046
Target:  5'- uGGGCaCCGcccGGUCGGGcagaGGCGCCUc -3'
miRNA:   3'- -CCUGcGGCu--CUAGCCUug--CCGCGGAu -5'
5445 5' -58.2 NC_001798.1 + 147178 0.66 0.826046
Target:  5'- cGGCGCCGGG--CGGAA-GGCGUCc- -3'
miRNA:   3'- cCUGCGGCUCuaGCCUUgCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 40004 0.66 0.826046
Target:  5'- cGGAC-UCGGGGUCGucGCGGCgGCCc- -3'
miRNA:   3'- -CCUGcGGCUCUAGCcuUGCCG-CGGau -5'
5445 5' -58.2 NC_001798.1 + 23551 0.66 0.823553
Target:  5'- aGGAgGCgGGGGUgCccgcgagggccccgGGGGCGGCGCCc- -3'
miRNA:   3'- -CCUgCGgCUCUA-G--------------CCUUGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 31863 0.66 0.817677
Target:  5'- -cACGCCGcGGagGGGGCGGCgGCCc- -3'
miRNA:   3'- ccUGCGGCuCUagCCUUGCCG-CGGau -5'
5445 5' -58.2 NC_001798.1 + 64710 0.66 0.817677
Target:  5'- uGACGuCCGAGAUCuGGGccgagGCGGCGgUg- -3'
miRNA:   3'- cCUGC-GGCUCUAG-CCU-----UGCCGCgGau -5'
5445 5' -58.2 NC_001798.1 + 28592 0.66 0.817677
Target:  5'- uGGugGCCuGGGAgaCGGc-CGcGCGCCUGg -3'
miRNA:   3'- -CCugCGG-CUCUa-GCCuuGC-CGCGGAU- -5'
5445 5' -58.2 NC_001798.1 + 67353 0.66 0.817677
Target:  5'- cGACGuUUGAGAUCGcGAcgaaGGCGCCg- -3'
miRNA:   3'- cCUGC-GGCUCUAGC-CUug--CCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 130300 0.66 0.817677
Target:  5'- -aGCGCCGA-AUgGGcGCGGUGCCg- -3'
miRNA:   3'- ccUGCGGCUcUAgCCuUGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 26919 0.67 0.809146
Target:  5'- cGGGCggGCgGGGGUCGGGcggGCGGgGUCg- -3'
miRNA:   3'- -CCUG--CGgCUCUAGCCU---UGCCgCGGau -5'
5445 5' -58.2 NC_001798.1 + 79955 0.67 0.809146
Target:  5'- uGGGCGUCcGGAgCGG--CGGCGCCg- -3'
miRNA:   3'- -CCUGCGGcUCUaGCCuuGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 102228 0.67 0.809146
Target:  5'- cGGGCGCgGc--UCGGGGCGG-GCCUc -3'
miRNA:   3'- -CCUGCGgCucuAGCCUUGCCgCGGAu -5'
5445 5' -58.2 NC_001798.1 + 102489 0.67 0.809146
Target:  5'- cGGGuagUGCgGGGA-CGGGcCGGCGCCg- -3'
miRNA:   3'- -CCU---GCGgCUCUaGCCUuGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 1531 0.67 0.800461
Target:  5'- -aGCGCCGGGAgcaCGGcGCGGCGgUa- -3'
miRNA:   3'- ccUGCGGCUCUa--GCCuUGCCGCgGau -5'
5445 5' -58.2 NC_001798.1 + 4214 0.67 0.800461
Target:  5'- cGGCGCuggCGGGggCGcGGGCGGCGUCg- -3'
miRNA:   3'- cCUGCG---GCUCuaGC-CUUGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 57141 0.67 0.800461
Target:  5'- cGACGaCCGAGuacagccgCGGGcUGGCGCCc- -3'
miRNA:   3'- cCUGC-GGCUCua------GCCUuGCCGCGGau -5'
5445 5' -58.2 NC_001798.1 + 124069 0.67 0.800461
Target:  5'- cGACcccCCGGGA--GGAgGCGGCGCCUGc -3'
miRNA:   3'- cCUGc--GGCUCUagCCU-UGCCGCGGAU- -5'
5445 5' -58.2 NC_001798.1 + 24009 0.67 0.800461
Target:  5'- cGGACGCgGAGGcgaUGGggUGGCuCCa- -3'
miRNA:   3'- -CCUGCGgCUCUa--GCCuuGCCGcGGau -5'
5445 5' -58.2 NC_001798.1 + 148419 0.67 0.799585
Target:  5'- uGGGCGCCGGGG-CGGGggugggcACGG-GCgUAa -3'
miRNA:   3'- -CCUGCGGCUCUaGCCU-------UGCCgCGgAU- -5'
5445 5' -58.2 NC_001798.1 + 123865 0.67 0.791631
Target:  5'- cGugGCCcacGAGcUCG--ACGGCGCCUAc -3'
miRNA:   3'- cCugCGG---CUCuAGCcuUGCCGCGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.