miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5446 3' -55.7 NC_001798.1 + 123449 0.66 0.918653
Target:  5'- ------cGACGcgcGCGCCCCCGACcCGGGg -3'
miRNA:   3'- ccacauaCUGU---CGCGGGGGUUG-GCUU- -5'
5446 3' -55.7 NC_001798.1 + 104448 0.66 0.918653
Target:  5'- uGGUGU-UGGCGGuCGCCCgCAGCa--- -3'
miRNA:   3'- -CCACAuACUGUC-GCGGGgGUUGgcuu -5'
5446 3' -55.7 NC_001798.1 + 69203 0.66 0.918653
Target:  5'- cGGUGggGUGccGCAGgGCcaaaaggagcgCCCCGGCCGGc -3'
miRNA:   3'- -CCACa-UAC--UGUCgCG-----------GGGGUUGGCUu -5'
5446 3' -55.7 NC_001798.1 + 9134 0.66 0.918653
Target:  5'- aGGUGgucUGcggcacgcgggcGCGGCGCCgCCCGcGCCGGGg -3'
miRNA:   3'- -CCACau-AC------------UGUCGCGG-GGGU-UGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 83875 0.66 0.918653
Target:  5'- ------aGGCGGCGaCCCCCGGCCcGGg -3'
miRNA:   3'- ccacauaCUGUCGC-GGGGGUUGG-CUu -5'
5446 3' -55.7 NC_001798.1 + 2423 0.66 0.91281
Target:  5'- cGGcGUGUGGCuGgGCCCCggCGGCUGGc -3'
miRNA:   3'- -CCaCAUACUGuCgCGGGG--GUUGGCUu -5'
5446 3' -55.7 NC_001798.1 + 15260 0.66 0.91281
Target:  5'- gGGgggGUAcgGGCGGUGCCCCgGguuCCGGg -3'
miRNA:   3'- -CCa--CAUa-CUGUCGCGGGGgUu--GGCUu -5'
5446 3' -55.7 NC_001798.1 + 115736 0.66 0.91281
Target:  5'- ------cGGCGGCGaagucCCCCCGGCCGGu -3'
miRNA:   3'- ccacauaCUGUCGC-----GGGGGUUGGCUu -5'
5446 3' -55.7 NC_001798.1 + 17268 0.66 0.91281
Target:  5'- cGGUGUG-GACGGCGgUCUCAaagaucaccagGCCGGc -3'
miRNA:   3'- -CCACAUaCUGUCGCgGGGGU-----------UGGCUu -5'
5446 3' -55.7 NC_001798.1 + 5027 0.66 0.906727
Target:  5'- ------cGACAuCGCCUCCGACCGGGg -3'
miRNA:   3'- ccacauaCUGUcGCGGGGGUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 24417 0.66 0.893847
Target:  5'- ------cGGCGGCGUCgCCGGCCGAc -3'
miRNA:   3'- ccacauaCUGUCGCGGgGGUUGGCUu -5'
5446 3' -55.7 NC_001798.1 + 126180 0.66 0.893847
Target:  5'- ---aUGUGGCAGCugacaucaGCCCCCAaggugcacACCGAc -3'
miRNA:   3'- ccacAUACUGUCG--------CGGGGGU--------UGGCUu -5'
5446 3' -55.7 NC_001798.1 + 79051 0.67 0.880038
Target:  5'- cGGUGUcggGGCuGCGggCCCAGCCGGc -3'
miRNA:   3'- -CCACAua-CUGuCGCggGGGUUGGCUu -5'
5446 3' -55.7 NC_001798.1 + 18579 0.67 0.872795
Target:  5'- cGGgccGUGUGAUAGCaagcaGCCCCC--CCGGGu -3'
miRNA:   3'- -CCa--CAUACUGUCG-----CGGGGGuuGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 70403 0.67 0.865334
Target:  5'- ------aGACGGCGCUCUUGGCCGAGa -3'
miRNA:   3'- ccacauaCUGUCGCGGGGGUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 68370 0.67 0.865334
Target:  5'- aGGUGcGUGcgguAgGGCGCCCCCGcagauCCGGc -3'
miRNA:   3'- -CCACaUAC----UgUCGCGGGGGUu----GGCUu -5'
5446 3' -55.7 NC_001798.1 + 39640 0.67 0.865334
Target:  5'- uGGUGUGgaguCGGCGCCgCCGggGCCGu- -3'
miRNA:   3'- -CCACAUacu-GUCGCGGgGGU--UGGCuu -5'
5446 3' -55.7 NC_001798.1 + 108937 0.67 0.849777
Target:  5'- -aUGcggGACAGC-CCUCCGGCCGAGa -3'
miRNA:   3'- ccACauaCUGUCGcGGGGGUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 105206 0.68 0.841695
Target:  5'- cGGUGggcGACGGCGCugCCCCGuCCGc- -3'
miRNA:   3'- -CCACauaCUGUCGCG--GGGGUuGGCuu -5'
5446 3' -55.7 NC_001798.1 + 81206 0.68 0.816318
Target:  5'- cGGUuUAc--CAGCGCCCCCucGCCGAc -3'
miRNA:   3'- -CCAcAUacuGUCGCGGGGGu-UGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.