miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5446 3' -55.7 NC_001798.1 + 102980 0.84 0.133906
Target:  5'- cGUGUGUGugAGCGCCUCCAcGCCGGGg -3'
miRNA:   3'- cCACAUACugUCGCGGGGGU-UGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 92267 0.8 0.228187
Target:  5'- cGUGUAUGGCcGCGCCUguCCGGCCGAAg -3'
miRNA:   3'- cCACAUACUGuCGCGGG--GGUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 53066 0.76 0.389557
Target:  5'- ------cGGCGGgGCCCCCGACCGAAc -3'
miRNA:   3'- ccacauaCUGUCgCGGGGGUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 40937 0.75 0.448744
Target:  5'- gGGUGUGUGAUcgcgcaGGCGCCCCgGgagaugagagcgguGCCGAc -3'
miRNA:   3'- -CCACAUACUG------UCGCGGGGgU--------------UGGCUu -5'
5446 3' -55.7 NC_001798.1 + 110624 0.74 0.48924
Target:  5'- gGGUGUGUGgacgcaGCGGCGUCcacgcccaaCCCAACCGAc -3'
miRNA:   3'- -CCACAUAC------UGUCGCGG---------GGGUUGGCUu -5'
5446 3' -55.7 NC_001798.1 + 71603 0.74 0.508651
Target:  5'- cGGccUGUcgGGCGGCGUCCUCAGCCa-- -3'
miRNA:   3'- -CC--ACAuaCUGUCGCGGGGGUUGGcuu -5'
5446 3' -55.7 NC_001798.1 + 96157 0.73 0.518478
Target:  5'- gGGUGacucgccAUGGCGgccGCGCCCCCGGCCGc- -3'
miRNA:   3'- -CCACa------UACUGU---CGCGGGGGUUGGCuu -5'
5446 3' -55.7 NC_001798.1 + 86812 0.73 0.53835
Target:  5'- -aUGUAUGACAuCGCCCCCGucgcuCCGGc -3'
miRNA:   3'- ccACAUACUGUcGCGGGGGUu----GGCUu -5'
5446 3' -55.7 NC_001798.1 + 141410 0.73 0.548385
Target:  5'- aGGUGUuUGAgAGCGCCCCCuucagcACCu-- -3'
miRNA:   3'- -CCACAuACUgUCGCGGGGGu-----UGGcuu -5'
5446 3' -55.7 NC_001798.1 + 111727 0.71 0.671371
Target:  5'- cGGUGgcccgcuUGGCccccGCGCCCCCGGCCc-- -3'
miRNA:   3'- -CCACau-----ACUGu---CGCGGGGGUUGGcuu -5'
5446 3' -55.7 NC_001798.1 + 51189 0.71 0.681606
Target:  5'- ------cGGCGGCGCCCCCccGCCGGg -3'
miRNA:   3'- ccacauaCUGUCGCGGGGGu-UGGCUu -5'
5446 3' -55.7 NC_001798.1 + 46226 0.7 0.691799
Target:  5'- cGGcUGUAUGACcguGGCGCCgUUGGCCGGGa -3'
miRNA:   3'- -CC-ACAUACUG---UCGCGGgGGUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 103567 0.7 0.731974
Target:  5'- --gGUcgGGCagaGGCGCCUCCAACCGc- -3'
miRNA:   3'- ccaCAuaCUG---UCGCGGGGGUUGGCuu -5'
5446 3' -55.7 NC_001798.1 + 23578 0.7 0.741822
Target:  5'- cGGg----GGCGGCGCCCC-GGCCGAGc -3'
miRNA:   3'- -CCacauaCUGUCGCGGGGgUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 143233 0.69 0.760257
Target:  5'- cGUGagcUGGCGGCGCCCCaguucguCGAUCGAAg -3'
miRNA:   3'- cCACau-ACUGUCGCGGGG-------GUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 109691 0.69 0.789414
Target:  5'- --cGUuccUGGCGggcGCGCCCUCGGCCGAGc -3'
miRNA:   3'- ccaCAu--ACUGU---CGCGGGGGUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 70099 0.68 0.798537
Target:  5'- -aUGUcgGACAGCGCgCUCCAGgucCCGGc -3'
miRNA:   3'- ccACAuaCUGUCGCG-GGGGUU---GGCUu -5'
5446 3' -55.7 NC_001798.1 + 119443 0.68 0.816318
Target:  5'- gGGUGUGUacguucGACGGCGCCgCCGuugugcaauCCGGc -3'
miRNA:   3'- -CCACAUA------CUGUCGCGGgGGUu--------GGCUu -5'
5446 3' -55.7 NC_001798.1 + 72814 0.68 0.816318
Target:  5'- -----cUGGCGGCGCCuCUCGGCCGGc -3'
miRNA:   3'- ccacauACUGUCGCGG-GGGUUGGCUu -5'
5446 3' -55.7 NC_001798.1 + 81206 0.68 0.816318
Target:  5'- cGGUuUAc--CAGCGCCCCCucGCCGAc -3'
miRNA:   3'- -CCAcAUacuGUCGCGGGGGu-UGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.