miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5446 3' -55.7 NC_001798.1 + 2423 0.66 0.91281
Target:  5'- cGGcGUGUGGCuGgGCCCCggCGGCUGGc -3'
miRNA:   3'- -CCaCAUACUGuCgCGGGG--GUUGGCUu -5'
5446 3' -55.7 NC_001798.1 + 5027 0.66 0.906727
Target:  5'- ------cGACAuCGCCUCCGACCGGGg -3'
miRNA:   3'- ccacauaCUGUcGCGGGGGUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 9134 0.66 0.918653
Target:  5'- aGGUGgucUGcggcacgcgggcGCGGCGCCgCCCGcGCCGGGg -3'
miRNA:   3'- -CCACau-AC------------UGUCGCGG-GGGU-UGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 15260 0.66 0.91281
Target:  5'- gGGgggGUAcgGGCGGUGCCCCgGguuCCGGg -3'
miRNA:   3'- -CCa--CAUa-CUGUCGCGGGGgUu--GGCUu -5'
5446 3' -55.7 NC_001798.1 + 17268 0.66 0.91281
Target:  5'- cGGUGUG-GACGGCGgUCUCAaagaucaccagGCCGGc -3'
miRNA:   3'- -CCACAUaCUGUCGCgGGGGU-----------UGGCUu -5'
5446 3' -55.7 NC_001798.1 + 18579 0.67 0.872795
Target:  5'- cGGgccGUGUGAUAGCaagcaGCCCCC--CCGGGu -3'
miRNA:   3'- -CCa--CAUACUGUCG-----CGGGGGuuGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 23578 0.7 0.741822
Target:  5'- cGGg----GGCGGCGCCCC-GGCCGAGc -3'
miRNA:   3'- -CCacauaCUGUCGCGGGGgUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 24417 0.66 0.893847
Target:  5'- ------cGGCGGCGUCgCCGGCCGAc -3'
miRNA:   3'- ccacauaCUGUCGCGGgGGUUGGCUu -5'
5446 3' -55.7 NC_001798.1 + 39640 0.67 0.865334
Target:  5'- uGGUGUGgaguCGGCGCCgCCGggGCCGu- -3'
miRNA:   3'- -CCACAUacu-GUCGCGGgGGU--UGGCuu -5'
5446 3' -55.7 NC_001798.1 + 40937 0.75 0.448744
Target:  5'- gGGUGUGUGAUcgcgcaGGCGCCCCgGgagaugagagcgguGCCGAc -3'
miRNA:   3'- -CCACAUACUG------UCGCGGGGgU--------------UGGCUu -5'
5446 3' -55.7 NC_001798.1 + 46226 0.7 0.691799
Target:  5'- cGGcUGUAUGACcguGGCGCCgUUGGCCGGGa -3'
miRNA:   3'- -CC-ACAUACUG---UCGCGGgGGUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 51189 0.71 0.681606
Target:  5'- ------cGGCGGCGCCCCCccGCCGGg -3'
miRNA:   3'- ccacauaCUGUCGCGGGGGu-UGGCUu -5'
5446 3' -55.7 NC_001798.1 + 53066 0.76 0.389557
Target:  5'- ------cGGCGGgGCCCCCGACCGAAc -3'
miRNA:   3'- ccacauaCUGUCgCGGGGGUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 68370 0.67 0.865334
Target:  5'- aGGUGcGUGcgguAgGGCGCCCCCGcagauCCGGc -3'
miRNA:   3'- -CCACaUAC----UgUCGCGGGGGUu----GGCUu -5'
5446 3' -55.7 NC_001798.1 + 69203 0.66 0.918653
Target:  5'- cGGUGggGUGccGCAGgGCcaaaaggagcgCCCCGGCCGGc -3'
miRNA:   3'- -CCACa-UAC--UGUCgCG-----------GGGGUUGGCUu -5'
5446 3' -55.7 NC_001798.1 + 70099 0.68 0.798537
Target:  5'- -aUGUcgGACAGCGCgCUCCAGgucCCGGc -3'
miRNA:   3'- ccACAuaCUGUCGCG-GGGGUU---GGCUu -5'
5446 3' -55.7 NC_001798.1 + 70403 0.67 0.865334
Target:  5'- ------aGACGGCGCUCUUGGCCGAGa -3'
miRNA:   3'- ccacauaCUGUCGCGGGGGUUGGCUU- -5'
5446 3' -55.7 NC_001798.1 + 71603 0.74 0.508651
Target:  5'- cGGccUGUcgGGCGGCGUCCUCAGCCa-- -3'
miRNA:   3'- -CC--ACAuaCUGUCGCGGGGGUUGGcuu -5'
5446 3' -55.7 NC_001798.1 + 72814 0.68 0.816318
Target:  5'- -----cUGGCGGCGCCuCUCGGCCGGc -3'
miRNA:   3'- ccacauACUGUCGCGG-GGGUUGGCUu -5'
5446 3' -55.7 NC_001798.1 + 79051 0.67 0.880038
Target:  5'- cGGUGUcggGGCuGCGggCCCAGCCGGc -3'
miRNA:   3'- -CCACAua-CUGuCGCggGGGUUGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.