miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5446 5' -67.9 NC_001798.1 + 15904 0.66 0.416246
Target:  5'- ---cGGGCGGggugggaagGGGGCGUaCGGaccgucaucuagggcCCCGGGg -3'
miRNA:   3'- uagaCCCGCC---------UCCCGCG-GCC---------------GGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 106472 0.66 0.413021
Target:  5'- aGUCUGGGC----GGCG-CGGCCCGaGGu -3'
miRNA:   3'- -UAGACCCGccucCCGCgGCCGGGC-CC- -5'
5446 5' -67.9 NC_001798.1 + 31758 0.66 0.413021
Target:  5'- aGUCUGGGcCGGgcAGGcgcgaccgacGCGCgCGGgUCGGGa -3'
miRNA:   3'- -UAGACCC-GCC--UCC----------CGCG-GCCgGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 14988 0.66 0.413021
Target:  5'- -cUUGGGCGGGGGG-GCgaGGCgugUUGGGg -3'
miRNA:   3'- uaGACCCGCCUCCCgCGg-CCG---GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 111587 0.66 0.413021
Target:  5'- -cCUGaGCGGGGGGC-CCGGC--GGGg -3'
miRNA:   3'- uaGACcCGCCUCCCGcGGCCGggCCC- -5'
5446 5' -67.9 NC_001798.1 + 43330 0.66 0.410613
Target:  5'- gGUCUGGGgGGcGGcagugccgccccccGCGUCGucCCCGGGg -3'
miRNA:   3'- -UAGACCCgCCuCC--------------CGCGGCc-GGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 51829 0.66 0.410613
Target:  5'- gGUCUGcGGgacgcgccugcacaCGGAGGG-GCgCGGCUCGGa -3'
miRNA:   3'- -UAGAC-CC--------------GCCUCCCgCG-GCCGGGCCc -5'
5446 5' -67.9 NC_001798.1 + 26516 0.66 0.405028
Target:  5'- -gCUGGccGCGGcGGGCGgCGGCgUGGa -3'
miRNA:   3'- uaGACC--CGCCuCCCGCgGCCGgGCCc -5'
5446 5' -67.9 NC_001798.1 + 6279 0.66 0.405028
Target:  5'- ---cGGGcCGGGGGGa--CGGgCCGGGg -3'
miRNA:   3'- uagaCCC-GCCUCCCgcgGCCgGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 6305 0.66 0.405028
Target:  5'- ---cGGGcCGGGGGGa--CGGgCCGGGg -3'
miRNA:   3'- uagaCCC-GCCUCCCgcgGCCgGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 6331 0.66 0.405028
Target:  5'- ---cGGGcCGGGGGGa--CGGgCCGGGg -3'
miRNA:   3'- uagaCCC-GCCUCCCgcgGCCgGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 30978 0.66 0.405028
Target:  5'- gGUC-GGGCGGGggucgggcGGGgGUCGGgCgGGGg -3'
miRNA:   3'- -UAGaCCCGCCU--------CCCgCGGCCgGgCCC- -5'
5446 5' -67.9 NC_001798.1 + 31011 0.66 0.405028
Target:  5'- gGUC-GGGCGGGggucgggcGGGgGUCGGgCgGGGg -3'
miRNA:   3'- -UAGaCCCGCCU--------CCCgCGGCCgGgCCC- -5'
5446 5' -67.9 NC_001798.1 + 33274 0.66 0.405028
Target:  5'- uGUCUuGGUGGGuGGGCggGCUGGCUggCGGGu -3'
miRNA:   3'- -UAGAcCCGCCU-CCCG--CGGCCGG--GCCC- -5'
5446 5' -67.9 NC_001798.1 + 52482 0.66 0.405028
Target:  5'- -cCUGGccuGCGGGGacgcGCGCCGGCgCaGGGa -3'
miRNA:   3'- uaGACC---CGCCUCc---CGCGGCCGgG-CCC- -5'
5446 5' -67.9 NC_001798.1 + 111899 0.66 0.405028
Target:  5'- ---cGGG-GGAGGuGCGCCugGGCCaGGGc -3'
miRNA:   3'- uagaCCCgCCUCC-CGCGG--CCGGgCCC- -5'
5446 5' -67.9 NC_001798.1 + 9138 0.66 0.397132
Target:  5'- gGUCUGcGGCacgcGGGcGcGGCGCCGcccGCgCCGGGg -3'
miRNA:   3'- -UAGAC-CCG----CCU-C-CCGCGGC---CG-GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 147230 0.66 0.397132
Target:  5'- ---cGGaGCGcGGGGGCcCCGGggcCCCGGGc -3'
miRNA:   3'- uagaCC-CGC-CUCCCGcGGCC---GGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 26482 0.66 0.397132
Target:  5'- -gCUGGGCGucGGcCGCgGGCCgcgCGGGg -3'
miRNA:   3'- uaGACCCGCcuCCcGCGgCCGG---GCCC- -5'
5446 5' -67.9 NC_001798.1 + 98558 0.66 0.389337
Target:  5'- -gCUGGuCGuGGGGGCGCUGGUggCCGcGGu -3'
miRNA:   3'- uaGACCcGC-CUCCCGCGGCCG--GGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.