miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5446 5' -67.9 NC_001798.1 + 2531 0.8 0.041952
Target:  5'- cGUCggcgGGGCGGGGGGCG-CGGCCCccgcGGGa -3'
miRNA:   3'- -UAGa---CCCGCCUCCCGCgGCCGGG----CCC- -5'
5446 5' -67.9 NC_001798.1 + 33391 0.8 0.042913
Target:  5'- --gUGGGCaggagugGGAGGGCGCCuGGCUCGGGg -3'
miRNA:   3'- uagACCCG-------CCUCCCGCGG-CCGGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 4116 0.8 0.043021
Target:  5'- -cCUGGGCGGgcucggccGGGGCGCCGccCCCGGGg -3'
miRNA:   3'- uaGACCCGCC--------UCCCGCGGCc-GGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 36514 0.75 0.092982
Target:  5'- ---cGGGCGG-GGGCGCgCGGCggCCGGGc -3'
miRNA:   3'- uagaCCCGCCuCCCGCG-GCCG--GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 36598 0.75 0.092982
Target:  5'- ---cGGGCGG-GGGCGCgCGGCggCCGGGc -3'
miRNA:   3'- uagaCCCGCCuCCCGCG-GCCG--GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 36556 0.75 0.092982
Target:  5'- ---cGGGCGG-GGGCGCgCGGCggCCGGGc -3'
miRNA:   3'- uagaCCCGCCuCCCGCG-GCCG--GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 3894 0.75 0.105047
Target:  5'- ---gGGGCGG-GGG-GCCGGCcCCGGGc -3'
miRNA:   3'- uagaCCCGCCuCCCgCGGCCG-GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 36306 0.75 0.105047
Target:  5'- --gUGuGGCGGcGGGGCGCgGGCCgGGGc -3'
miRNA:   3'- uagAC-CCGCC-UCCCGCGgCCGGgCCC- -5'
5446 5' -67.9 NC_001798.1 + 148410 0.74 0.112978
Target:  5'- ---cGGGCGGGguGGGCGCCGGggCGGGg -3'
miRNA:   3'- uagaCCCGCCU--CCCGCGGCCggGCCC- -5'
5446 5' -67.9 NC_001798.1 + 2604 0.74 0.112978
Target:  5'- uUCgggGGGCGcGGGGCGCCG-CCCGGcGg -3'
miRNA:   3'- uAGa--CCCGCcUCCCGCGGCcGGGCC-C- -5'
5446 5' -67.9 NC_001798.1 + 15187 0.74 0.115744
Target:  5'- uUCgggGGGUGGGGGG-GCUGGCgagCCGGGg -3'
miRNA:   3'- uAGa--CCCGCCUCCCgCGGCCG---GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 3007 0.74 0.115744
Target:  5'- ---cGGGCGcGGGGGCGCggCGGgCCGGGc -3'
miRNA:   3'- uagaCCCGC-CUCCCGCG--GCCgGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 23877 0.74 0.121466
Target:  5'- cUCUGgggggcgcccgaGGCGGAGgaGGCGCgGGCCCGGu -3'
miRNA:   3'- uAGAC------------CCGCCUC--CCGCGgCCGGGCCc -5'
5446 5' -67.9 NC_001798.1 + 153077 0.73 0.140244
Target:  5'- ---cGGGCGGAGcGGCGgggCGGCgCCGGGc -3'
miRNA:   3'- uagaCCCGCCUC-CCGCg--GCCG-GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 83850 0.73 0.144993
Target:  5'- cGUCcGGGCGGcgcuggcgggcccgaGGcGGCGacccCCGGCCCGGGc -3'
miRNA:   3'- -UAGaCCCGCC---------------UC-CCGC----GGCCGGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 34856 0.73 0.145683
Target:  5'- ---cGGGCGGGGGacgccuuccgcccgGCGCCGGgcggcuaCCCGGGa -3'
miRNA:   3'- uagaCCCGCCUCC--------------CGCGGCC-------GGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 2971 0.73 0.147073
Target:  5'- cGUCgGcGuGCGGcGGGGCgGCCGGCCCGcGGg -3'
miRNA:   3'- -UAGaC-C-CGCC-UCCCG-CGGCCGGGC-CC- -5'
5446 5' -67.9 NC_001798.1 + 2403 0.73 0.147073
Target:  5'- ---aGGGCGGcggccgAGGGCGCCGGCguguggCUGGGc -3'
miRNA:   3'- uagaCCCGCC------UCCCGCGGCCG------GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 96988 0.72 0.154204
Target:  5'- ---cGGGCGGcGGGGCcaggGCCGGCCCGc- -3'
miRNA:   3'- uagaCCCGCC-UCCCG----CGGCCGGGCcc -5'
5446 5' -67.9 NC_001798.1 + 32359 0.72 0.154204
Target:  5'- -----cGCGGAGGGCGgccCCGaGCCCGGGg -3'
miRNA:   3'- uagaccCGCCUCCCGC---GGC-CGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.