miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5446 5' -67.9 NC_001798.1 + 2403 0.73 0.147073
Target:  5'- ---aGGGCGGcggccgAGGGCGCCGGCguguggCUGGGc -3'
miRNA:   3'- uagaCCCGCC------UCCCGCGGCCG------GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 2531 0.8 0.041952
Target:  5'- cGUCggcgGGGCGGGGGGCG-CGGCCCccgcGGGa -3'
miRNA:   3'- -UAGa---CCCGCCUCCCGCgGCCGGG----CCC- -5'
5446 5' -67.9 NC_001798.1 + 2576 0.7 0.208609
Target:  5'- ---gGGGCGGGGGGCGUCcGCgCGGc -3'
miRNA:   3'- uagaCCCGCCUCCCGCGGcCGgGCCc -5'
5446 5' -67.9 NC_001798.1 + 2604 0.74 0.112978
Target:  5'- uUCgggGGGCGcGGGGCGCCG-CCCGGcGg -3'
miRNA:   3'- uAGa--CCCGCcUCCCGCGGCcGGGCC-C- -5'
5446 5' -67.9 NC_001798.1 + 2971 0.73 0.147073
Target:  5'- cGUCgGcGuGCGGcGGGGCgGCCGGCCCGcGGg -3'
miRNA:   3'- -UAGaC-C-CGCC-UCCCG-CGGCCGGGC-CC- -5'
5446 5' -67.9 NC_001798.1 + 3007 0.74 0.115744
Target:  5'- ---cGGGCGcGGGGGCGCggCGGgCCGGGc -3'
miRNA:   3'- uagaCCCGC-CUCCCGCG--GCCgGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 3894 0.75 0.105047
Target:  5'- ---gGGGCGG-GGG-GCCGGCcCCGGGc -3'
miRNA:   3'- uagaCCCGCCuCCCgCGGCCG-GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 4116 0.8 0.043021
Target:  5'- -cCUGGGCGGgcucggccGGGGCGCCGccCCCGGGg -3'
miRNA:   3'- uaGACCCGCC--------UCCCGCGGCc-GGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 4405 0.66 0.381642
Target:  5'- uGUCggcgGGGCGccGGGGGUcgcggcgacagGCUGGCCaUGGGg -3'
miRNA:   3'- -UAGa---CCCGC--CUCCCG-----------CGGCCGG-GCCC- -5'
5446 5' -67.9 NC_001798.1 + 4838 0.68 0.317075
Target:  5'- ---cGGGCcgcgcGGcGGGGCGaCGGUCCGGGu -3'
miRNA:   3'- uagaCCCG-----CC-UCCCGCgGCCGGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 6247 0.67 0.359174
Target:  5'- ---cGGGCGGgggacGGGGgGaCGGgCCGGGg -3'
miRNA:   3'- uagaCCCGCC-----UCCCgCgGCCgGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 6279 0.66 0.405028
Target:  5'- ---cGGGcCGGGGGGa--CGGgCCGGGg -3'
miRNA:   3'- uagaCCC-GCCUCCCgcgGCCgGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 6305 0.66 0.405028
Target:  5'- ---cGGGcCGGGGGGa--CGGgCCGGGg -3'
miRNA:   3'- uagaCCC-GCCUCCCgcgGCCgGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 6331 0.66 0.405028
Target:  5'- ---cGGGcCGGGGGGa--CGGgCCGGGg -3'
miRNA:   3'- uagaCCC-GCCUCCCgcgGCCgGGCCC- -5'
5446 5' -67.9 NC_001798.1 + 6370 0.68 0.303893
Target:  5'- ---cGGGcCGGGGGGCcgggggGCCGGggggCCGGGg -3'
miRNA:   3'- uagaCCC-GCCUCCCG------CGGCCg---GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 9138 0.66 0.397132
Target:  5'- gGUCUGcGGCacgcGGGcGcGGCGCCGcccGCgCCGGGg -3'
miRNA:   3'- -UAGAC-CCG----CCU-C-CCGCGGC---CG-GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 9702 0.68 0.278196
Target:  5'- ---cGGGCGGGuGGGCucgacgggcucggGCUGGCgCUGGGg -3'
miRNA:   3'- uagaCCCGCCU-CCCG-------------CGGCCG-GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 11450 0.67 0.36656
Target:  5'- aAUCUGGccGCGG-GGGCGCCuguaucGGCgCUGGc -3'
miRNA:   3'- -UAGACC--CGCCuCCCGCGG------CCG-GGCCc -5'
5446 5' -67.9 NC_001798.1 + 14988 0.66 0.413021
Target:  5'- -cUUGGGCGGGGGG-GCgaGGCgugUUGGGg -3'
miRNA:   3'- uaGACCCGCCUCCCgCGg-CCG---GGCCC- -5'
5446 5' -67.9 NC_001798.1 + 15035 0.67 0.323826
Target:  5'- -cCU-GGCGGgagcguGGGGCGgaUgGGCCCGGGg -3'
miRNA:   3'- uaGAcCCGCC------UCCCGC--GgCCGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.