miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5447 3' -56.6 NC_001798.1 + 128877 0.66 0.904596
Target:  5'- aUGGCGCgGCGAUcgCCGgaggCGUUC-Cg -3'
miRNA:   3'- -ACCGUGgCGCUGa-GGCaca-GCAAGaG- -5'
5447 3' -56.6 NC_001798.1 + 73111 0.66 0.904596
Target:  5'- gUGGUuCCG-GACUCCGUGgaccugUCUCc -3'
miRNA:   3'- -ACCGuGGCgCUGAGGCACagca--AGAG- -5'
5447 3' -56.6 NC_001798.1 + 46066 0.66 0.891765
Target:  5'- gGGuCACCGgGACUCCG-GUCa----- -3'
miRNA:   3'- aCC-GUGGCgCUGAGGCaCAGcaagag -5'
5447 3' -56.6 NC_001798.1 + 59833 0.66 0.878038
Target:  5'- gGGCGCCGCGgucGC-CCGcGUCcggCUCg -3'
miRNA:   3'- aCCGUGGCGC---UGaGGCaCAGcaaGAG- -5'
5447 3' -56.6 NC_001798.1 + 31998 0.66 0.870848
Target:  5'- cGGCGCCGCGccggGCcCCGgacUCGgaCUCg -3'
miRNA:   3'- aCCGUGGCGC----UGaGGCac-AGCaaGAG- -5'
5447 3' -56.6 NC_001798.1 + 5195 0.67 0.863448
Target:  5'- cGGUAgCCGCG-CUCCGUGUgGacgaUCg -3'
miRNA:   3'- aCCGU-GGCGCuGAGGCACAgCaag-AG- -5'
5447 3' -56.6 NC_001798.1 + 4772 0.67 0.855842
Target:  5'- cGGCAUCgGCGGCggCGUcGUCGgcCUCg -3'
miRNA:   3'- aCCGUGG-CGCUGagGCA-CAGCaaGAG- -5'
5447 3' -56.6 NC_001798.1 + 15204 0.67 0.851183
Target:  5'- cUGGCGagccggggggagcguCCGCGGgUCCGUGUgGgugcgUCUUu -3'
miRNA:   3'- -ACCGU---------------GGCGCUgAGGCACAgCa----AGAG- -5'
5447 3' -56.6 NC_001798.1 + 32068 0.69 0.770007
Target:  5'- gGGCGCCGCG-C-CCccGUCGgcgUCUCc -3'
miRNA:   3'- aCCGUGGCGCuGaGGcaCAGCa--AGAG- -5'
5447 3' -56.6 NC_001798.1 + 151292 0.69 0.760619
Target:  5'- cGGCcuccaCGCGGgUCCGgggGUCGUUCa- -3'
miRNA:   3'- aCCGug---GCGCUgAGGCa--CAGCAAGag -5'
5447 3' -56.6 NC_001798.1 + 106105 0.72 0.570982
Target:  5'- cGGCGCCGCGACcgCCGgGUCugcgGUUC-Cg -3'
miRNA:   3'- aCCGUGGCGCUGa-GGCaCAG----CAAGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.