miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5447 5' -61.1 NC_001798.1 + 36023 0.65 0.698796
Target:  5'- cGCGCCuuggcuguuuggggGGUGGCgGCGGUgGUCGGcgUGCUGc -3'
miRNA:   3'- -UGCGG--------------UCGCCG-UGCCG-UAGCC--ACGAC- -5'
5447 5' -61.1 NC_001798.1 + 48166 0.66 0.691931
Target:  5'- gGCGCCuGGCGGCcacgcacgcccgGCuGGCggCGGUacaGCUGu -3'
miRNA:   3'- -UGCGG-UCGCCG------------UG-CCGuaGCCA---CGAC- -5'
5447 5' -61.1 NC_001798.1 + 44881 0.66 0.691931
Target:  5'- cGCGCguGUuccGGgAUGGCGUCccugcucgGGUGCUGu -3'
miRNA:   3'- -UGCGguCG---CCgUGCCGUAG--------CCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 35532 0.66 0.691931
Target:  5'- cCGCC-GCGGC-CGGCG-CGGgGCg- -3'
miRNA:   3'- uGCGGuCGCCGuGCCGUaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 2705 0.66 0.691931
Target:  5'- -gGCC-GCGGCgACGGUGUCGGccaGCa- -3'
miRNA:   3'- ugCGGuCGCCG-UGCCGUAGCCa--CGac -5'
5447 5' -61.1 NC_001798.1 + 36522 0.66 0.690948
Target:  5'- gGCGCgCGGCGGCcgggcgggggcgcGCGGCGgccgggCGGggGCg- -3'
miRNA:   3'- -UGCG-GUCGCCG-------------UGCCGUa-----GCCa-CGac -5'
5447 5' -61.1 NC_001798.1 + 36585 0.66 0.690948
Target:  5'- gGCGCgCGGCGGCcgggcgggggcgcGCGGCGgccgggCGGggGCg- -3'
miRNA:   3'- -UGCG-GUCGCCG-------------UGCCGUa-----GCCa-CGac -5'
5447 5' -61.1 NC_001798.1 + 3306 0.66 0.682084
Target:  5'- cCGCCgacggcaacggGGCGGCgGCGGCggCGG-GCUu -3'
miRNA:   3'- uGCGG-----------UCGCCG-UGCCGuaGCCaCGAc -5'
5447 5' -61.1 NC_001798.1 + 90722 0.66 0.682084
Target:  5'- uCGCgCGG-GGCACGGCAcugcaGGUGCc- -3'
miRNA:   3'- uGCG-GUCgCCGUGCCGUag---CCACGac -5'
5447 5' -61.1 NC_001798.1 + 70314 0.66 0.682084
Target:  5'- cGCGgCGGuCGGCcCGGCGgaggcgCGGgcgUGCUGg -3'
miRNA:   3'- -UGCgGUC-GCCGuGCCGUa-----GCC---ACGAC- -5'
5447 5' -61.1 NC_001798.1 + 15476 0.66 0.672199
Target:  5'- gACGUgGGCGGgGgGGUcgUGGggGCUGg -3'
miRNA:   3'- -UGCGgUCGCCgUgCCGuaGCCa-CGAC- -5'
5447 5' -61.1 NC_001798.1 + 150195 0.66 0.672199
Target:  5'- gGCGUggggGGCGGCACcgggGGUGUUGGUGCc- -3'
miRNA:   3'- -UGCGg---UCGCCGUG----CCGUAGCCACGac -5'
5447 5' -61.1 NC_001798.1 + 111810 0.66 0.662282
Target:  5'- uGCGCCGGUcGCG-GGCGUCcaGGgGCUGg -3'
miRNA:   3'- -UGCGGUCGcCGUgCCGUAG--CCaCGAC- -5'
5447 5' -61.1 NC_001798.1 + 109383 0.66 0.662282
Target:  5'- -aGCgGGCuGCGCGGCcgacUCGGUGUUc -3'
miRNA:   3'- ugCGgUCGcCGUGCCGu---AGCCACGAc -5'
5447 5' -61.1 NC_001798.1 + 132689 0.66 0.642387
Target:  5'- cACGCCGacGCGGCGCaGGCG-CGGgggucGCg- -3'
miRNA:   3'- -UGCGGU--CGCCGUG-CCGUaGCCa----CGac -5'
5447 5' -61.1 NC_001798.1 + 129056 0.66 0.642387
Target:  5'- gGCGCUGGUGGaguuaaauaGCGGCGUUgucucggaGGUGCUu -3'
miRNA:   3'- -UGCGGUCGCCg--------UGCCGUAG--------CCACGAc -5'
5447 5' -61.1 NC_001798.1 + 46474 0.67 0.63641
Target:  5'- cUGCCAGCGGgGaCGGCGccaacugcggaaacCGGUGCa- -3'
miRNA:   3'- uGCGGUCGCCgU-GCCGUa-------------GCCACGac -5'
5447 5' -61.1 NC_001798.1 + 150839 0.67 0.632425
Target:  5'- gGCGCCAgGgGGCGCcggucgGGUcgCGGcggGCUGg -3'
miRNA:   3'- -UGCGGU-CgCCGUG------CCGuaGCCa--CGAC- -5'
5447 5' -61.1 NC_001798.1 + 154407 0.67 0.632425
Target:  5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3'
miRNA:   3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5'
5447 5' -61.1 NC_001798.1 + 69 0.67 0.632425
Target:  5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3'
miRNA:   3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.