miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5447 5' -61.1 NC_001798.1 + 154094 0.67 0.582749
Target:  5'- aGCGCCGG-GGCGCGGC--CGGcGCc- -3'
miRNA:   3'- -UGCGGUCgCCGUGCCGuaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 97760 0.67 0.582749
Target:  5'- -gGUCAGCGucCACGGCga-GGUGCUGc -3'
miRNA:   3'- ugCGGUCGCc-GUGCCGuagCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 28670 0.67 0.621466
Target:  5'- gGCGCCgcguggcGGCGGCcgagGCGGuCAUCGGaccgUGcCUGg -3'
miRNA:   3'- -UGCGG-------UCGCCG----UGCC-GUAGCC----AC-GAC- -5'
5447 5' -61.1 NC_001798.1 + 37196 0.67 0.622462
Target:  5'- gGCGCCGcGCcgaacgacgGGCGCGGCGcCGGaGCUu -3'
miRNA:   3'- -UGCGGU-CG---------CCGUGCCGUaGCCaCGAc -5'
5447 5' -61.1 NC_001798.1 + 46474 0.67 0.63641
Target:  5'- cUGCCAGCGGgGaCGGCGccaacugcggaaacCGGUGCa- -3'
miRNA:   3'- uGCGGUCGCCgU-GCCGUa-------------GCCACGac -5'
5447 5' -61.1 NC_001798.1 + 142130 0.67 0.632425
Target:  5'- cGCGCUGcCGGaCGCGGCAcaggUGGUGCa- -3'
miRNA:   3'- -UGCGGUcGCC-GUGCCGUa---GCCACGac -5'
5447 5' -61.1 NC_001798.1 + 150839 0.67 0.632425
Target:  5'- gGCGCCAgGgGGCGCcggucgGGUcgCGGcggGCUGg -3'
miRNA:   3'- -UGCGGU-CgCCGUG------CCGuaGCCa--CGAC- -5'
5447 5' -61.1 NC_001798.1 + 154407 0.67 0.632425
Target:  5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3'
miRNA:   3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5'
5447 5' -61.1 NC_001798.1 + 69 0.67 0.632425
Target:  5'- -gGCgGGCGGCgGCGGCGggCGGgcgGCa- -3'
miRNA:   3'- ugCGgUCGCCG-UGCCGUa-GCCa--CGac -5'
5447 5' -61.1 NC_001798.1 + 102212 0.67 0.622462
Target:  5'- cGCGCCGGgagucgaccgGGCGCGGC-UCGGgGCg- -3'
miRNA:   3'- -UGCGGUCg---------CCGUGCCGuAGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 34961 0.68 0.553294
Target:  5'- gGCGCCGGagGGgGCGGCcgCcgaGGUGCg- -3'
miRNA:   3'- -UGCGGUCg-CCgUGCCGuaG---CCACGac -5'
5447 5' -61.1 NC_001798.1 + 122046 0.68 0.553294
Target:  5'- cCGUCAGCGGgggagccCugGGCGcgucggacgcggaggCGGUGCUGg -3'
miRNA:   3'- uGCGGUCGCC-------GugCCGUa--------------GCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 4195 0.68 0.553294
Target:  5'- cCGCCcGCGGCGUGGUcugCGGcGCUGg -3'
miRNA:   3'- uGCGGuCGCCGUGCCGua-GCCaCGAC- -5'
5447 5' -61.1 NC_001798.1 + 112592 0.68 0.553294
Target:  5'- --cCCAcuGUGGauCGCGGCGUCGGUGCUu -3'
miRNA:   3'- ugcGGU--CGCC--GUGCCGUAGCCACGAc -5'
5447 5' -61.1 NC_001798.1 + 152644 0.68 0.553294
Target:  5'- gGCGCCccgcCGGCGCGGCccugagUGGUGCc- -3'
miRNA:   3'- -UGCGGuc--GCCGUGCCGua----GCCACGac -5'
5447 5' -61.1 NC_001798.1 + 53101 0.68 0.557198
Target:  5'- aACGCCGggcgcGCGGCGCgagcucccugcggcuGGCG-CGGUGcCUGa -3'
miRNA:   3'- -UGCGGU-----CGCCGUG---------------CCGUaGCCAC-GAC- -5'
5447 5' -61.1 NC_001798.1 + 113976 0.68 0.563069
Target:  5'- cCGCCGGCGGUGaGGCGUU-GUGCg- -3'
miRNA:   3'- uGCGGUCGCCGUgCCGUAGcCACGac -5'
5447 5' -61.1 NC_001798.1 + 132145 0.68 0.563069
Target:  5'- cCGCCGGgGGC-CGGCGggCGGgGCg- -3'
miRNA:   3'- uGCGGUCgCCGuGCCGUa-GCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 3009 0.68 0.572889
Target:  5'- gGCGCgGG-GGCGCGGCGggcCGG-GCUc -3'
miRNA:   3'- -UGCGgUCgCCGUGCCGUa--GCCaCGAc -5'
5447 5' -61.1 NC_001798.1 + 134674 0.68 0.553294
Target:  5'- cCG-CAGCGGguCACGGCGcgGGUGCUGc -3'
miRNA:   3'- uGCgGUCGCC--GUGCCGUagCCACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.