Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5447 | 5' | -61.1 | NC_001798.1 | + | 1424 | 0.7 | 0.415386 |
Target: 5'- gGCcCCAGCGcGCGCaGGCG-CGGUGCg- -3' miRNA: 3'- -UGcGGUCGC-CGUG-CCGUaGCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 153818 | 0.7 | 0.415386 |
Target: 5'- gGCGgCGGCaGGCGCGGCGUgCGGgGCc- -3' miRNA: 3'- -UGCgGUCG-CCGUGCCGUA-GCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 3425 | 0.7 | 0.432596 |
Target: 5'- cGCGCCAGCaggggcgcguaGGCGCGGCG-CaG-GCUGg -3' miRNA: 3'- -UGCGGUCG-----------CCGUGCCGUaGcCaCGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 34582 | 0.7 | 0.441355 |
Target: 5'- -gGCuCAcGCGGCGCGGCGucUCGGUGg-- -3' miRNA: 3'- ugCG-GU-CGCCGUGCCGU--AGCCACgac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 22874 | 0.7 | 0.441355 |
Target: 5'- cCGCCGcGCGGCcCGGguUCGGgugGCa- -3' miRNA: 3'- uGCGGU-CGCCGuGCCguAGCCa--CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 31139 | 0.71 | 0.374256 |
Target: 5'- aGCGCCc-CGGCGCGGgGgcggCGGUGCg- -3' miRNA: 3'- -UGCGGucGCCGUGCCgUa---GCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 79527 | 0.71 | 0.374256 |
Target: 5'- cGCGCCGGCGGagaccCGgGGCcccUGGUGCUGc -3' miRNA: 3'- -UGCGGUCGCC-----GUgCCGua-GCCACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 25966 | 0.71 | 0.381453 |
Target: 5'- -gGCCGGCGGCGCGGgAccugCGccgcaccGUGCUGg -3' miRNA: 3'- ugCGGUCGCCGUGCCgUa---GC-------CACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 106126 | 0.71 | 0.390374 |
Target: 5'- uGCGguuCCGGCGGCACGGCAUacgUGGacagGCUu -3' miRNA: 3'- -UGC---GGUCGCCGUGCCGUA---GCCa---CGAc -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 118615 | 0.72 | 0.314416 |
Target: 5'- gAUGCC-GCGGCGCuGCAgCGGUGCg- -3' miRNA: 3'- -UGCGGuCGCCGUGcCGUaGCCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 26494 | 0.72 | 0.321484 |
Target: 5'- cCGCgGGCcGCGCGGgGaCGGUGCUGg -3' miRNA: 3'- uGCGgUCGcCGUGCCgUaGCCACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 114865 | 0.72 | 0.328671 |
Target: 5'- cGCGCgGGCGGC-CGGUcgacggGGUGCUGg -3' miRNA: 3'- -UGCGgUCGCCGuGCCGuag---CCACGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 154046 | 0.72 | 0.333772 |
Target: 5'- cGCGCCGgggcGCGGCACGGCuggagcgccggggcgCGGcacgGCUGg -3' miRNA: 3'- -UGCGGU----CGCCGUGCCGua-------------GCCa---CGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 2499 | 0.72 | 0.338931 |
Target: 5'- aGCGCCGcggggcgcggcggccGCGGCgGCGGCGUCGGcgggGCg- -3' miRNA: 3'- -UGCGGU---------------CGCCG-UGCCGUAGCCa---CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 76002 | 0.72 | 0.358595 |
Target: 5'- gGCGCCGGCGGCAgGGCccc-GUGCc- -3' miRNA: 3'- -UGCGGUCGCCGUgCCGuagcCACGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 24551 | 0.73 | 0.307465 |
Target: 5'- gGCGCCGGCGGUggugGCGGCGgcCGGcGCg- -3' miRNA: 3'- -UGCGGUCGCCG----UGCCGUa-GCCaCGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 4747 | 0.73 | 0.293919 |
Target: 5'- gACGCCGGggccgccucguCGGCAuCGGCAUCGGcgGCg- -3' miRNA: 3'- -UGCGGUC-----------GCCGU-GCCGUAGCCa-CGac -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 77240 | 0.74 | 0.268231 |
Target: 5'- gGCGCCcuGGCGGaCGCGGUGUCGGccCUGg -3' miRNA: 3'- -UGCGG--UCGCC-GUGCCGUAGCCacGAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 4373 | 0.74 | 0.250178 |
Target: 5'- cGCGCCGGCGGCGguggUGGUggUGGUGgUGg -3' miRNA: 3'- -UGCGGUCGCCGU----GCCGuaGCCACgAC- -5' |
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5447 | 5' | -61.1 | NC_001798.1 | + | 2418 | 0.75 | 0.233139 |
Target: 5'- gGCGCCGGCguguGGCugGGCccCGGcgGCUGg -3' miRNA: 3'- -UGCGGUCG----CCGugCCGuaGCCa-CGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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