miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5447 5' -61.1 NC_001798.1 + 97660 0.7 0.41284
Target:  5'- aGCGCCGGCGGCuguacGCGGaccgccugaccaagCGGUcGCUGg -3'
miRNA:   3'- -UGCGGUCGCCG-----UGCCgua-----------GCCA-CGAC- -5'
5447 5' -61.1 NC_001798.1 + 153818 0.7 0.415386
Target:  5'- gGCGgCGGCaGGCGCGGCGUgCGGgGCc- -3'
miRNA:   3'- -UGCgGUCG-CCGUGCCGUA-GCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 1424 0.7 0.415386
Target:  5'- gGCcCCAGCGcGCGCaGGCG-CGGUGCg- -3'
miRNA:   3'- -UGcGGUCGC-CGUG-CCGUaGCCACGac -5'
5447 5' -61.1 NC_001798.1 + 71562 0.69 0.495901
Target:  5'- gGCGCCAGCGaGCACacGCA-CGGgcgGCUc -3'
miRNA:   3'- -UGCGGUCGC-CGUGc-CGUaGCCa--CGAc -5'
5447 5' -61.1 NC_001798.1 + 51840 0.69 0.486589
Target:  5'- cGCGCCugcacacggAGgGGCGCGGC-UCGGaGCUc -3'
miRNA:   3'- -UGCGG---------UCgCCGUGCCGuAGCCaCGAc -5'
5447 5' -61.1 NC_001798.1 + 72317 0.69 0.495901
Target:  5'- uACGCCcuGGCGGCcCGGgG--GGUGCUGc -3'
miRNA:   3'- -UGCGG--UCGCCGuGCCgUagCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 150360 0.69 0.495901
Target:  5'- cGCGuCCAcCGGCACGGCGggCGGcGCg- -3'
miRNA:   3'- -UGC-GGUcGCCGUGCCGUa-GCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 22290 0.69 0.486589
Target:  5'- cGCGCgGGCGGaGCGGCggCGGcGCg- -3'
miRNA:   3'- -UGCGgUCGCCgUGCCGuaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 140186 0.69 0.486589
Target:  5'- uACGCgGGCcGCcuGCGGC--CGGUGCUGg -3'
miRNA:   3'- -UGCGgUCGcCG--UGCCGuaGCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 12856 0.69 0.483812
Target:  5'- gGCGUUGGUGGUgucggacagcuccgGCGGCAgcagGGUGCUGg -3'
miRNA:   3'- -UGCGGUCGCCG--------------UGCCGUag--CCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 4414 0.69 0.477361
Target:  5'- gGCGCCGGgGGuCGCGGCGaCaG-GCUGg -3'
miRNA:   3'- -UGCGGUCgCC-GUGCCGUaGcCaCGAC- -5'
5447 5' -61.1 NC_001798.1 + 36141 0.69 0.468221
Target:  5'- cCGCCGGUggGGCGCGGCggcgGUCGG-GgUGg -3'
miRNA:   3'- uGCGGUCG--CCGUGCCG----UAGCCaCgAC- -5'
5447 5' -61.1 NC_001798.1 + 2664 0.69 0.468221
Target:  5'- cGCGCCucccGCGGCGCGGaggCGG-GCg- -3'
miRNA:   3'- -UGCGGu---CGCCGUGCCguaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 122046 0.68 0.553294
Target:  5'- cCGUCAGCGGgggagccCugGGCGcgucggacgcggaggCGGUGCUGg -3'
miRNA:   3'- uGCGGUCGCC-------GugCCGUa--------------GCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 34961 0.68 0.553294
Target:  5'- gGCGCCGGagGGgGCGGCcgCcgaGGUGCg- -3'
miRNA:   3'- -UGCGGUCg-CCgUGCCGuaG---CCACGac -5'
5447 5' -61.1 NC_001798.1 + 24450 0.68 0.524298
Target:  5'- cCGCCGGCuacGGCGCcGCGggGGUGCUc -3'
miRNA:   3'- uGCGGUCG---CCGUGcCGUagCCACGAc -5'
5447 5' -61.1 NC_001798.1 + 52499 0.68 0.572889
Target:  5'- cGCGCCGGCGcagggacgacGCgGCGGCcgCGcgcgccGUGCUGg -3'
miRNA:   3'- -UGCGGUCGC----------CG-UGCCGuaGC------CACGAC- -5'
5447 5' -61.1 NC_001798.1 + 98570 0.68 0.524298
Target:  5'- gGCGCUGGUGGCcgcggUGGCGUCGGcgGCc- -3'
miRNA:   3'- -UGCGGUCGCCGu----GCCGUAGCCa-CGac -5'
5447 5' -61.1 NC_001798.1 + 104518 0.68 0.522385
Target:  5'- cGCGgCGGCGGCGCGGUugacgucgucgCGGUGg-- -3'
miRNA:   3'- -UGCgGUCGCCGUGCCGua---------GCCACgac -5'
5447 5' -61.1 NC_001798.1 + 2848 0.68 0.524298
Target:  5'- cGCGCaCGGCGGcCACGGCGgccUCGcUGCc- -3'
miRNA:   3'- -UGCG-GUCGCC-GUGCCGU---AGCcACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.