miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5447 5' -61.1 NC_001798.1 + 4195 0.68 0.553294
Target:  5'- cCGCCcGCGGCGUGGUcugCGGcGCUGg -3'
miRNA:   3'- uGCGGuCGCCGUGCCGua-GCCaCGAC- -5'
5447 5' -61.1 NC_001798.1 + 28076 0.68 0.533904
Target:  5'- cGCGCCGGCcGCguccucgcuccuGCGGCGcUGGcUGCUGg -3'
miRNA:   3'- -UGCGGUCGcCG------------UGCCGUaGCC-ACGAC- -5'
5447 5' -61.1 NC_001798.1 + 12023 0.68 0.54357
Target:  5'- aACGCCAcgGCGGgGCGGCGggGGcaUGCg- -3'
miRNA:   3'- -UGCGGU--CGCCgUGCCGUagCC--ACGac -5'
5447 5' -61.1 NC_001798.1 + 54646 0.68 0.54357
Target:  5'- cGCGCCccccgagcAGCGGC-CGGCAgccgCGGcGCg- -3'
miRNA:   3'- -UGCGG--------UCGCCGuGCCGUa---GCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 113976 0.68 0.563069
Target:  5'- cCGCCGGCGGUGaGGCGUU-GUGCg- -3'
miRNA:   3'- uGCGGUCGCCGUgCCGUAGcCACGac -5'
5447 5' -61.1 NC_001798.1 + 53101 0.68 0.557198
Target:  5'- aACGCCGggcgcGCGGCGCgagcucccugcggcuGGCG-CGGUGcCUGa -3'
miRNA:   3'- -UGCGGU-----CGCCGUG---------------CCGUaGCCAC-GAC- -5'
5447 5' -61.1 NC_001798.1 + 98570 0.68 0.524298
Target:  5'- gGCGCUGGUGGCcgcggUGGCGUCGGcgGCc- -3'
miRNA:   3'- -UGCGGUCGCCGu----GCCGUAGCCa-CGac -5'
5447 5' -61.1 NC_001798.1 + 152644 0.68 0.553294
Target:  5'- gGCGCCccgcCGGCGCGGCccugagUGGUGCc- -3'
miRNA:   3'- -UGCGGuc--GCCGUGCCGua----GCCACGac -5'
5447 5' -61.1 NC_001798.1 + 112592 0.68 0.553294
Target:  5'- --cCCAcuGUGGauCGCGGCGUCGGUGCUu -3'
miRNA:   3'- ugcGGU--CGCC--GUGCCGUAGCCACGAc -5'
5447 5' -61.1 NC_001798.1 + 122046 0.68 0.553294
Target:  5'- cCGUCAGCGGgggagccCugGGCGcgucggacgcggaggCGGUGCUGg -3'
miRNA:   3'- uGCGGUCGCC-------GugCCGUa--------------GCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 34961 0.68 0.553294
Target:  5'- gGCGCCGGagGGgGCGGCcgCcgaGGUGCg- -3'
miRNA:   3'- -UGCGGUCg-CCgUGCCGuaG---CCACGac -5'
5447 5' -61.1 NC_001798.1 + 134674 0.68 0.553294
Target:  5'- cCG-CAGCGGguCACGGCGcgGGUGCUGc -3'
miRNA:   3'- uGCgGUCGCC--GUGCCGUagCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 28670 0.67 0.621466
Target:  5'- gGCGCCgcguggcGGCGGCcgagGCGGuCAUCGGaccgUGcCUGg -3'
miRNA:   3'- -UGCGG-------UCGCCG----UGCC-GUAGCC----AC-GAC- -5'
5447 5' -61.1 NC_001798.1 + 102212 0.67 0.622462
Target:  5'- cGCGCCGGgagucgaccgGGCGCGGC-UCGGgGCg- -3'
miRNA:   3'- -UGCGGUCg---------CCGUGCCGuAGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 37196 0.67 0.622462
Target:  5'- gGCGCCGcGCcgaacgacgGGCGCGGCGcCGGaGCUu -3'
miRNA:   3'- -UGCGGU-CG---------CCGUGCCGUaGCCaCGAc -5'
5447 5' -61.1 NC_001798.1 + 34790 0.67 0.612506
Target:  5'- aACGCCGcCGGCGCGGCc-CGGgGCc- -3'
miRNA:   3'- -UGCGGUcGCCGUGCCGuaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 131354 0.67 0.602564
Target:  5'- gACGUCGGCgcccGGCGCGGCcUCGGgggaucccCUGg -3'
miRNA:   3'- -UGCGGUCG----CCGUGCCGuAGCCac------GAC- -5'
5447 5' -61.1 NC_001798.1 + 154154 0.67 0.602564
Target:  5'- -gGCgGGCGGCugGGC-UCGGcGUa- -3'
miRNA:   3'- ugCGgUCGCCGugCCGuAGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 154094 0.67 0.582749
Target:  5'- aGCGCCGG-GGCGCGGC--CGGcGCc- -3'
miRNA:   3'- -UGCGGUCgCCGUGCCGuaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 97760 0.67 0.582749
Target:  5'- -gGUCAGCGucCACGGCga-GGUGCUGc -3'
miRNA:   3'- ugCGGUCGCc-GUGCCGuagCCACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.