miRNA display CGI


Results 61 - 80 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5447 5' -61.1 NC_001798.1 + 34790 0.67 0.612506
Target:  5'- aACGCCGcCGGCGCGGCc-CGGgGCc- -3'
miRNA:   3'- -UGCGGUcGCCGUGCCGuaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 131354 0.67 0.602564
Target:  5'- gACGUCGGCgcccGGCGCGGCcUCGGgggaucccCUGg -3'
miRNA:   3'- -UGCGGUCG----CCGUGCCGuAGCCac------GAC- -5'
5447 5' -61.1 NC_001798.1 + 154154 0.67 0.602564
Target:  5'- -gGCgGGCGGCugGGC-UCGGcGUa- -3'
miRNA:   3'- ugCGgUCGCCGugCCGuAGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 145802 0.67 0.586703
Target:  5'- cGCGCgGGCGGCagaaacgcgggcgcgGCGGCGgUCGG-GgUGg -3'
miRNA:   3'- -UGCGgUCGCCG---------------UGCCGU-AGCCaCgAC- -5'
5447 5' -61.1 NC_001798.1 + 154094 0.67 0.582749
Target:  5'- aGCGCCGG-GGCGCGGC--CGGcGCc- -3'
miRNA:   3'- -UGCGGUCgCCGUGCCGuaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 97760 0.67 0.582749
Target:  5'- -gGUCAGCGucCACGGCga-GGUGCUGc -3'
miRNA:   3'- ugCGGUCGCc-GUGCCGuagCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 3306 0.66 0.682084
Target:  5'- cCGCCgacggcaacggGGCGGCgGCGGCggCGG-GCUu -3'
miRNA:   3'- uGCGG-----------UCGCCG-UGCCGuaGCCaCGAc -5'
5447 5' -61.1 NC_001798.1 + 36522 0.66 0.690948
Target:  5'- gGCGCgCGGCGGCcgggcgggggcgcGCGGCGgccgggCGGggGCg- -3'
miRNA:   3'- -UGCG-GUCGCCG-------------UGCCGUa-----GCCa-CGac -5'
5447 5' -61.1 NC_001798.1 + 36585 0.66 0.690948
Target:  5'- gGCGCgCGGCGGCcgggcgggggcgcGCGGCGgccgggCGGggGCg- -3'
miRNA:   3'- -UGCG-GUCGCCG-------------UGCCGUa-----GCCa-CGac -5'
5447 5' -61.1 NC_001798.1 + 2705 0.66 0.691931
Target:  5'- -gGCC-GCGGCgACGGUGUCGGccaGCa- -3'
miRNA:   3'- ugCGGuCGCCG-UGCCGUAGCCa--CGac -5'
5447 5' -61.1 NC_001798.1 + 35532 0.66 0.691931
Target:  5'- cCGCC-GCGGC-CGGCG-CGGgGCg- -3'
miRNA:   3'- uGCGGuCGCCGuGCCGUaGCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 44881 0.66 0.691931
Target:  5'- cGCGCguGUuccGGgAUGGCGUCccugcucgGGUGCUGu -3'
miRNA:   3'- -UGCGguCG---CCgUGCCGUAG--------CCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 90722 0.66 0.682084
Target:  5'- uCGCgCGG-GGCACGGCAcugcaGGUGCc- -3'
miRNA:   3'- uGCG-GUCgCCGUGCCGUag---CCACGac -5'
5447 5' -61.1 NC_001798.1 + 70314 0.66 0.682084
Target:  5'- cGCGgCGGuCGGCcCGGCGgaggcgCGGgcgUGCUGg -3'
miRNA:   3'- -UGCgGUC-GCCGuGCCGUa-----GCC---ACGAC- -5'
5447 5' -61.1 NC_001798.1 + 15476 0.66 0.672199
Target:  5'- gACGUgGGCGGgGgGGUcgUGGggGCUGg -3'
miRNA:   3'- -UGCGgUCGCCgUgCCGuaGCCa-CGAC- -5'
5447 5' -61.1 NC_001798.1 + 111810 0.66 0.662282
Target:  5'- uGCGCCGGUcGCG-GGCGUCcaGGgGCUGg -3'
miRNA:   3'- -UGCGGUCGcCGUgCCGUAG--CCaCGAC- -5'
5447 5' -61.1 NC_001798.1 + 109383 0.66 0.662282
Target:  5'- -aGCgGGCuGCGCGGCcgacUCGGUGUUc -3'
miRNA:   3'- ugCGgUCGcCGUGCCGu---AGCCACGAc -5'
5447 5' -61.1 NC_001798.1 + 132689 0.66 0.642387
Target:  5'- cACGCCGacGCGGCGCaGGCG-CGGgggucGCg- -3'
miRNA:   3'- -UGCGGU--CGCCGUG-CCGUaGCCa----CGac -5'
5447 5' -61.1 NC_001798.1 + 129056 0.66 0.642387
Target:  5'- gGCGCUGGUGGaguuaaauaGCGGCGUUgucucggaGGUGCUu -3'
miRNA:   3'- -UGCGGUCGCCg--------UGCCGUAG--------CCACGAc -5'
5447 5' -61.1 NC_001798.1 + 150195 0.66 0.672199
Target:  5'- gGCGUggggGGCGGCACcgggGGUGUUGGUGCc- -3'
miRNA:   3'- -UGCGg---UCGCCGUG----CCGUAGCCACGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.