miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5447 5' -61.1 NC_001798.1 + 76470 0.78 0.136089
Target:  5'- aACGaCCAGCaGGCGCGGCGcagcUCGGgGCUGg -3'
miRNA:   3'- -UGC-GGUCG-CCGUGCCGU----AGCCaCGAC- -5'
5447 5' -61.1 NC_001798.1 + 91263 0.77 0.158104
Target:  5'- cUGCCGGCGGCAaGGCggCGGUGCc- -3'
miRNA:   3'- uGCGGUCGCCGUgCCGuaGCCACGac -5'
5447 5' -61.1 NC_001798.1 + 2418 0.75 0.233139
Target:  5'- gGCGCCGGCguguGGCugGGCccCGGcgGCUGg -3'
miRNA:   3'- -UGCGGUCG----CCGugCCGuaGCCa-CGAC- -5'
5447 5' -61.1 NC_001798.1 + 4373 0.74 0.250178
Target:  5'- cGCGCCGGCGGCGguggUGGUggUGGUGgUGg -3'
miRNA:   3'- -UGCGGUCGCCGU----GCCGuaGCCACgAC- -5'
5447 5' -61.1 NC_001798.1 + 77240 0.74 0.268231
Target:  5'- gGCGCCcuGGCGGaCGCGGUGUCGGccCUGg -3'
miRNA:   3'- -UGCGG--UCGCC-GUGCCGUAGCCacGAC- -5'
5447 5' -61.1 NC_001798.1 + 4747 0.73 0.293919
Target:  5'- gACGCCGGggccgccucguCGGCAuCGGCAUCGGcgGCg- -3'
miRNA:   3'- -UGCGGUC-----------GCCGU-GCCGUAGCCa-CGac -5'
5447 5' -61.1 NC_001798.1 + 24551 0.73 0.307465
Target:  5'- gGCGCCGGCGGUggugGCGGCGgcCGGcGCg- -3'
miRNA:   3'- -UGCGGUCGCCG----UGCCGUa-GCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 118615 0.72 0.314416
Target:  5'- gAUGCC-GCGGCGCuGCAgCGGUGCg- -3'
miRNA:   3'- -UGCGGuCGCCGUGcCGUaGCCACGac -5'
5447 5' -61.1 NC_001798.1 + 26494 0.72 0.321484
Target:  5'- cCGCgGGCcGCGCGGgGaCGGUGCUGg -3'
miRNA:   3'- uGCGgUCGcCGUGCCgUaGCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 114865 0.72 0.328671
Target:  5'- cGCGCgGGCGGC-CGGUcgacggGGUGCUGg -3'
miRNA:   3'- -UGCGgUCGCCGuGCCGuag---CCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 154046 0.72 0.333772
Target:  5'- cGCGCCGgggcGCGGCACGGCuggagcgccggggcgCGGcacgGCUGg -3'
miRNA:   3'- -UGCGGU----CGCCGUGCCGua-------------GCCa---CGAC- -5'
5447 5' -61.1 NC_001798.1 + 2499 0.72 0.338931
Target:  5'- aGCGCCGcggggcgcggcggccGCGGCgGCGGCGUCGGcgggGCg- -3'
miRNA:   3'- -UGCGGU---------------CGCCG-UGCCGUAGCCa---CGac -5'
5447 5' -61.1 NC_001798.1 + 76002 0.72 0.358595
Target:  5'- gGCGCCGGCGGCAgGGCccc-GUGCc- -3'
miRNA:   3'- -UGCGGUCGCCGUgCCGuagcCACGac -5'
5447 5' -61.1 NC_001798.1 + 79527 0.71 0.374256
Target:  5'- cGCGCCGGCGGagaccCGgGGCcccUGGUGCUGc -3'
miRNA:   3'- -UGCGGUCGCC-----GUgCCGua-GCCACGAC- -5'
5447 5' -61.1 NC_001798.1 + 31139 0.71 0.374256
Target:  5'- aGCGCCc-CGGCGCGGgGgcggCGGUGCg- -3'
miRNA:   3'- -UGCGGucGCCGUGCCgUa---GCCACGac -5'
5447 5' -61.1 NC_001798.1 + 25966 0.71 0.381453
Target:  5'- -gGCCGGCGGCGCGGgAccugCGccgcaccGUGCUGg -3'
miRNA:   3'- ugCGGUCGCCGUGCCgUa---GC-------CACGAC- -5'
5447 5' -61.1 NC_001798.1 + 106126 0.71 0.390374
Target:  5'- uGCGguuCCGGCGGCACGGCAUacgUGGacagGCUu -3'
miRNA:   3'- -UGC---GGUCGCCGUGCCGUA---GCCa---CGAc -5'
5447 5' -61.1 NC_001798.1 + 97660 0.7 0.41284
Target:  5'- aGCGCCGGCGGCuguacGCGGaccgccugaccaagCGGUcGCUGg -3'
miRNA:   3'- -UGCGGUCGCCG-----UGCCgua-----------GCCA-CGAC- -5'
5447 5' -61.1 NC_001798.1 + 153818 0.7 0.415386
Target:  5'- gGCGgCGGCaGGCGCGGCGUgCGGgGCc- -3'
miRNA:   3'- -UGCgGUCG-CCGUGCCGUA-GCCaCGac -5'
5447 5' -61.1 NC_001798.1 + 1424 0.7 0.415386
Target:  5'- gGCcCCAGCGcGCGCaGGCG-CGGUGCg- -3'
miRNA:   3'- -UGcGGUCGC-CGUG-CCGUaGCCACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.